Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213306g00002 ATGAGAAACAACACCGGCCACTCCAAAAGGTTCAGTCTTGCTGCGAATCAGAAGCAAGTGTTGCTGTTCTATGGCTGCGAGAATATGCAGGATCAGAGTATTGGGTGTTCAGCTGAAAACACAACGAGATCAGTTGTGGCCATTTATGGGGATGATGTTGAGAATTTAAAGTTGGCTCGGAAGAATTGCAATGTTACGACGGTGAGCGTGACAATGGTGGAAGATGAGAAAGGAGGGATTGAAGAAGGATTGAGAAGAGGGTTTTTGATGAATTGGACGGCCAAAAATTGCAGTGAGTGCTCGATGAGTGGTGGGAGGTGTGGGTTCGATGAAGAAGAGTATGCTTTCATATGCTATTGTCCTGATAGAATCGATTTAGAGAGCTGTTATCCACAACCAGGTTCAATAGCAGCTGCAGTAATGGCAGGATTGTTGAGTATTTGTTATTTTGCATACAAGTCACCAAGATGGCGAGAAAAATATTGCTTTCCCACAAAGAGTAACCAAGACATTGAAACCTTCTTAAAAAATCATGGAGTTTTAACTATAAAAAGATACAAATTCTCTGATGTGAAGAAAATGACCAAATCATTCAAAGTTAAACTCGGACAAGGTGGTTTTGGTGCTGTATACAAGGGAGTGTTACCCAATGGATCTCATGTGGCGGTCAAAATGTTGAATCCATCCAAAGGAAATGGCAAAGAGTTTATCAATGAGGTAGCTAGCATTAGCAGAACTTCTCATGTCAATGTTGTCACCCTTCTTGGGTTCTGCTTCCAAGGCGGCAAGAAAGTTCTTATTTATGAGTTTATATCTAATGGTTCTCTTGACAAGTTTATTTACAGAAAAGAAGGATTTGAAACTACTTCATTGTTGAGTTGGGATAAGTTGTATCAAATTTCCATAGGGATAGCTAGAGGGCTAGATTACGGAATGATGCTTCTTGATATAGTGGGAGGAAAGAAGAACATTAATGTAGAATGTAGTCAAACGAGCGAGGTATATTTCCCTGATTGGATATACAAAAGGGTTGAGCAAGAAGGCACTCAATTGGGTGCTGAAGATGGAGAGGTGGCAACAGAGGAAAATGAAGTGATTAAGAAAATGACAGTGGTGGGTTTATGGTGTATTCAAATAATTCCAAATGATAGACCTACAATGAGCAAAGTTGTAGAAATGTTAGAAGGCAACACATATTCCATAGAAATGCCACCAAGACCTGCTCTGTCTTCTCCTGTAAGATCGATTGCAGAATCTTCTACTTTTTGTGCATTCTCTAAGATAAGTAGTTGA 1293 0.3975 MRNNTGHSKRFSLAANQKQVLLFYGCENMQDQSIGCSAENTTRSVVAIYGDDVENLKLARKNCNVTTVSVTMVEDEKGGIEEGLRRGFLMNWTAKNCSECSMSGGRCGFDEEEYAFICYCPDRIDLESCYPQPGSIAAAVMAGLLSICYFAYKSPRWREKYCFPTKSNQDIETFLKNHGVLTIKRYKFSDVKKMTKSFKVKLGQGGFGAVYKGVLPNGSHVAVKMLNPSKGNGKEFINEVASISRTSHVNVVTLLGFCFQGGKKVLIYEFISNGSLDKFIYRKEGFETTSLLSWDKLYQISIGIARGLDYGMMLLDIVGGKKNINVECSQTSEVYFPDWIYKRVEQEGTQLGAEDGEVATEENEVIKKMTVVGLWCIQIIPNDRPTMSKVVEMLEGNTYSIEMPPRPALSSPVRSIAESSTFCAFSKISS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213306g00002 430 PANTHER RUST RESISTANCE KINASE LR10-RELATED 168 310 IPR045874 GO:0004672
Stsc213306g00002 430 FunFam serine/threonine-protein kinase PBS1-like 165 270 - -
Stsc213306g00002 430 Pfam Protein tyrosine and serine/threonine kinase 198 310 IPR001245 GO:0004672|GO:0006468
Stsc213306g00002 430 Pfam Wall-associated receptor kinase C-terminal 54 122 IPR032872 -
Stsc213306g00002 430 ProSiteProfiles Protein kinase domain profile. 196 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213306g00002 430 SUPERFAMILY Protein kinase-like (PK-like) 179 310 IPR011009 -
Stsc213306g00002 430 ProSitePatterns Protein kinases ATP-binding region signature. 202 224 IPR017441 GO:0005524
Stsc213306g00002 430 Gene3D Transferase(Phosphotransferase) domain 1 310 405 - -
Stsc213306g00002 430 Gene3D Transferase(Phosphotransferase) domain 1 177 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213306g00002 Stsc-Chr213306 4088 7993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213306g00002 310 422 Receptor kinase-like Gene Family AT5G38260 43.103 3.67e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc213306g00002 PK_Tyr_Ser-Thr 1.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213306g00002 - - adu:107490347 643.654