Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213239g00001 ATGGGTTTCTATGCTGAGGACTCATCATCAGCATATGGTTTGAAAATAGGTCAAGCAATATATGAAGCAGCTCTAATCGTTGCAGTTCTGAGATGGATCTTGTGCTTGGTTTTCAGGCTCATCAAAGATAGAAGGACGACACCTCCTTCGTCGTCTTCTTCTTGTACTCTTGTGTTGACCACGTTTCGTGAGGTAATGGAGAGGCTTCCGGAGACAGAAGAAGATACATCTTGTGCTGTGTGCTTGAACCAGATGAAGATGGAAGATGAGGTTAGGGAACTCATGAACTGCTACCATGTGTTCCACAAAGAATGCATAGACAGATGGTTGGACCATGATGATAACAACCACAACCCTACTTGCCCTCTTTGTAGAGCACCTTTGATCACTCTTAATAACAGCTGTCATACTTCTTCAGAGAGCTCTTATGGTTGTGCGCCTCCATCCCCTCAACCTAGTTGGGCTGTGGAGAGACTTCTCTACCTCTTCGGAGATGATCTCCTTCCATGTTAA 513 0.4483 MGFYAEDSSSAYGLKIGQAIYEAALIVAVLRWILCLVFRLIKDRRTTPPSSSSSCTLVLTTFREVMERLPETEEDTSCAVCLNQMKMEDEVRELMNCYHVFHKECIDRWLDHDDNNHNPTCPLCRAPLITLNNSCHTSSESSYGCAPPSPQPSWAVERLLYLFGDDLLPC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213239g00001 170 ProSiteProfiles Zinc finger RING-type profile. 78 125 IPR001841 -
Stsc213239g00001 170 Pfam Ring finger domain 77 125 IPR001841 -
Stsc213239g00001 170 SMART ringv_2 77 125 IPR011016 GO:0008270
Stsc213239g00001 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 130 IPR013083 -
Stsc213239g00001 170 SMART ring_2 78 124 IPR001841 -
Stsc213239g00001 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 25 168 - -
Stsc213239g00001 170 SUPERFAMILY RING/U-box 71 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213239g00001 Stsc-Chr213239 4292 5308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213239g00001 1 167 C3H Transcription Factor Family AT5G20885 47.312 1.42e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213239g00001 K16281 - gmx:111138523 226.098