Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213185g00001 ATGGGAGGGGCAACACTGCCACCTGGATTTCGTTTTCACCCAACAGATGAAGAATTATTGGGATATTACCTGAAAAGAAAAGTGGAAGGGCTTGAAATTGAGCTTGAGGTTATCCCTGTCATTGATTTTTACAAGTTTGATCCTTGGGAGTTGCCTGAGAAATCATTTTTGGCAAATAGAGACAGAGAATGGTTCTTCTTTTGTCCAAGGGACAGGAAGTACCCAAATGGATCAAGAACAAACAGAGCCACCAAATGTGGTTATTGGAAAGCCACTGGAAAAGACAAGAAAATTGTGTGCCAATTTGATACTCCTTCCACTGTCACTGGATATAGAAAGACCCTTGTTTTCTACCGTGGTAGAGCCCCTTTGGGTGATAGAACTGATTGGGTCATGCACGAGTATCGCCTCGCCGATGATCTCAGCCTACCGTCGTCATGTTTTCAGGGTGGTTATGCCTTGTGTCGGGTTTTTAAGAAGAACGAAAAGGGGAACGATTCGCAGGGGATCAATGGGAACGATGAGTCAACGAGATCCTCGAATGAGCCCTTCAACATTTCAGCTGATGCTTCATCCTCTCAAGCAAGCCAGTTGAACAGCGAGGGTGTTTATTCAAGCCCCATTGCTTCTCCACACAATGTGGCTCCAATGGCTGACTCCAACCAACCTTCTATAAACACCAATTCTTCAGCAGAATTTTGGGTGTCCCCTGATATGATTCTTGATTCTTCAAAGGACTACTCTCAAGTACAAAATACTTTTACAAGGTGTGACATACCAAGTAGTACAGTGACACCATGGCAGTCATTGGATCAAACAGAAATTTCCACTAGTTCATCATACTCAAATTTTAATGGGCAAATCGAATTTTCGGATGATTTTAATATGATCAGCGACATGTCACATTACTCGATGCAAGAAGATTTTATGTACTTTCATGGAAATGGAAGTTATTATGTTCATATTGATTCAGTTGACTCCAACCTTGGCACTGCTCTGCCCCATTCGGACTCATCTCCACCAGCATGCTACAAGGATTCCAATCAAGAAAAAGCAGCTGGTCTTGGTGGCAAAACACTCATATAA 1086 0.4263 MGGATLPPGFRFHPTDEELLGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLANRDREWFFFCPRDRKYPNGSRTNRATKCGYWKATGKDKKIVCQFDTPSTVTGYRKTLVFYRGRAPLGDRTDWVMHEYRLADDLSLPSSCFQGGYALCRVFKKNEKGNDSQGINGNDESTRSSNEPFNISADASSSQASQLNSEGVYSSPIASPHNVAPMADSNQPSINTNSSAEFWVSPDMILDSSKDYSQVQNTFTRCDIPSSTVTPWQSLDQTEISTSSSYSNFNGQIEFSDDFNMISDMSHYSMQEDFMYFHGNGSYYVHIDSVDSNLGTALPHSDSSPPACYKDSNQEKAAGLGGKTLI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213185g00001 361 MobiDBLite consensus disorder prediction 331 361 - -
Stsc213185g00001 361 MobiDBLite consensus disorder prediction 331 345 - -
Stsc213185g00001 361 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Stsc213185g00001 361 Pfam No apical meristem (NAM) protein 7 137 IPR003441 GO:0003677|GO:0006355
Stsc213185g00001 361 FunFam Nac domain-containing protein 86 15 163 - -
Stsc213185g00001 361 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Stsc213185g00001 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 244 - -
Stsc213185g00001 361 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Stsc213185g00001 361 MobiDBLite consensus disorder prediction 164 207 - -
Stsc213185g00001 361 MobiDBLite consensus disorder prediction 164 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213185g00001 Stsc-Chr213185 2052 7560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213185g00001 1 289 NAC Transcription Factor Family AT4G17980 55.137 1.60e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc213185g00001 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213185g00001 - - aip:107605232 490.345