LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc213157g00001	ATGTGTTATGCTGAAAATGCTTCTCCCTTTCAACATTCTTCTCCATCTTTGGCTATGATGCCACTCAAATCTGATGGCTCACTCTGCATAATGGAAGCTCTCACTACCACATCACAAACCCACCAAGTGATGGTGGCAAGTTCTTCATGTTCATCTCCAAAGCTTGAAGACTTTCTAGGTGGTGCAACAATGGGAGCTCATGAATATGGTGAACATGAAAGAGAAGCAATGGCTCTAAGCTTAGACAGCATTTACTATAACAACAATTATAGCCATCATCATCATCAACATCAAAATTCTGAGGCTGAAAACAACAACAGACAACAACATTGTTCTTCTTCTTCTTTGGACCTTATTCTCTCAGACCCTTTTAAGCAACAAGGCCATAATAATAATAATAGTAGTAGTAATAACAATCATGAACATGAACATGAACATGATCATGATGTGAATCAATACTACTCATCAGCAGCACTTGGTTGCAACAATGATGGCCCTGCTAACATGCTACCATTTGTGGAAGAAGAAGAAGAAACAAAGGAACCCCTTCATCATCATCAACAAATGCATCAAGTTGAAGAGCAAGGAAACTGGGTTAATGGTAACAATAATGGCATGGTGGAAAATGTTAATGTTAATGGCGGTGGAAATGGTAATGGGAGTTTGAAATCTTTGAGTCTTTCAATGAGTCCTGGTTGTTCTTCAACTTGTCAACAATCAACAAGCCATGTAACAGTTTCATCAACTCATCAGAATCAGATCTCAGCAGGTTCTAATTCTTGCAAGGCCATGGAAGTTGCAAAGAACAAGAGAGGAGGTGGACACAATAATAGTAGCAAGCAAACTGTTCATAGGAAATCCATTGAGACATTTGGTCAAAGGACTTCTCAGTACAGAGGTGTCACAAGGCATAGATGGACCGGCAGATATGAAGCACATTTGTGGGATAATAGCTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGTTTATTTGGGTGGCTATGACATGGAAGAAAAAGCTGCAAGGGCTTATGATCTTGCAGCCCTTAAGTATTGGGGACCTTCAACACATATAAACTTCCCGCTAGAGAATTATCAAAATGAACTTGAAGAAATGAAGAACATGAACAGGCAGGAATATGTTGCACATTTGAGAAGAAAAAGTAGTGGATTTTCAAGGGGAGCTTCAATGTATAGAGGGGTGACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGAAGAGTAGCAGGAAATAAGGATCTTTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCAGAAGCATATGATGTGGCTGCAATCAAATTCAGAGGAGTGAATGCAGTCACAAACTTTGACATTTCAAGATATGATGTTGAAAGGATCATGGCAAGTAACACCCTTCTTGCCGGAGAATTGGCCAGAAGAAACACCAATGAACCGCCGAAGGCGATTGAGGCGGCTCCGGCTCCGGTCCCAGCACCAACATTAGAGTACAATGTTGTAACAACCCACATCATCAACAACAACAACAAGGAATTGCTAGAAGTTGAAGGTTGTAACACCAACACGAACAACATTGAAAATGGTACTTCATCAGATCAATGGAAGAAAATTGGATTGTTGTATCAACAACAATCCAATAACAATAGTAATGGGGTTTGTGGAAGTTACAGAAATTCCCAAAATTTTTGTGGTGGGGCCCTACAAGATCTAATTGGAATTGATTCAGTTGTTGGATCAAGCCATCATCATCATCAAAACCCTAATATGGTGCTAGATGAGTCTAATGCAAAGATGGGAGGGACTACTACTCATTTTTCAAACCCATCTTCACTAGTGACAAGTTTGAGCAACTCATCAAGAGAAGGTAGCCCTGACCACAACAAGAACAACAACAATAGTAATGGTCCCACATCATCACTTCTCTTTCATCAAAACCAAAAGCAACATCATCATCATCATCCAATGCTTTTGCCAAAGGTTAATGTTGTTAGCCCTATTGTTGCCAATAGCACTACTACTAGTGTTGTTGGCTCTAATTGGTTCCCTTCAGCAGCTGCTCAAATTAGGTCTACAACTATGTCTCCCATGCCGATTTTTGCGGCATGGACTGAACCGTAG	2136	0.4064	MCYAENASPFQHSSPSLAMMPLKSDGSLCIMEALTTTSQTHQVMVASSSCSSPKLEDFLGGATMGAHEYGEHEREAMALSLDSIYYNNNYSHHHHQHQNSEAENNNRQQHCSSSSLDLILSDPFKQQGHNNNNSSSNNNHEHEHEHDHDVNQYYSSAALGCNNDGPANMLPFVEEEEETKEPLHHHQQMHQVEEQGNWVNGNNNGMVENVNVNGGGNGNGSLKSLSLSMSPGCSSTCQQSTSHVTVSSTHQNQISAGSNSCKAMEVAKNKRGGGHNNSSKQTVHRKSIETFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNTNEPPKAIEAAPAPVPAPTLEYNVVTTHIINNNNKELLEVEGCNTNTNNIENGTSSDQWKKIGLLYQQQSNNNSNGVCGSYRNSQNFCGGALQDLIGIDSVVGSSHHHHQNPNMVLDESNAKMGGTTTHFSNPSSLVTSLSNSSREGSPDHNKNNNNSNGPTSSLLFHQNQKQHHHHHPMLLPKVNVVSPIVANSTTTSVVGSNWFPSAAAQIRSTTMSPMPIFAAWTEP	711

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc213157g00001	711	ProSiteProfiles	AP2/ERF domain profile.	399	457	IPR001471	GO:0003700\|GO:0006355
Stsc213157g00001	711	SUPERFAMILY	DNA-binding domain	398	459	IPR016177	GO:0003677
Stsc213157g00001	711	SMART	rav1_2	297	369	IPR001471	GO:0003700\|GO:0006355
Stsc213157g00001	711	SMART	rav1_2	399	463	IPR001471	GO:0003700\|GO:0006355
Stsc213157g00001	711	MobiDBLite	consensus disorder prediction	91	148	-	-
Stsc213157g00001	711	FunFam	AP2-like ethylene-responsive transcription factor	398	459	-	-
Stsc213157g00001	711	ProSiteProfiles	AP2/ERF domain profile.	297	363	IPR001471	GO:0003700\|GO:0006355
Stsc213157g00001	711	FunFam	AP2-like ethylene-responsive transcription factor ANT	296	365	-	-
Stsc213157g00001	711	Gene3D	AP2/ERF domain	399	459	IPR036955	GO:0003700\|GO:0006355
Stsc213157g00001	711	Gene3D	AP2/ERF domain	296	365	IPR036955	GO:0003700\|GO:0006355

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc213157g00001	Stsc-Chr213157	1434	7030	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc213157g00001	1	87	AP2-EREBP Transcription Factor Family	AT4G37750	43.820	4.96e-11	63.9

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Stsc213157g00001		AP2	1.7e-13	CL0081

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc213157g00001	K09285		-	gmx:100798179	590.112

Showing 1 to 1 of 1 entries

Previous1Next