Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213157g00001 ATGTGTTATGCTGAAAATGCTTCTCCCTTTCAACATTCTTCTCCATCTTTGGCTATGATGCCACTCAAATCTGATGGCTCACTCTGCATAATGGAAGCTCTCACTACCACATCACAAACCCACCAAGTGATGGTGGCAAGTTCTTCATGTTCATCTCCAAAGCTTGAAGACTTTCTAGGTGGTGCAACAATGGGAGCTCATGAATATGGTGAACATGAAAGAGAAGCAATGGCTCTAAGCTTAGACAGCATTTACTATAACAACAATTATAGCCATCATCATCATCAACATCAAAATTCTGAGGCTGAAAACAACAACAGACAACAACATTGTTCTTCTTCTTCTTTGGACCTTATTCTCTCAGACCCTTTTAAGCAACAAGGCCATAATAATAATAATAGTAGTAGTAATAACAATCATGAACATGAACATGAACATGATCATGATGTGAATCAATACTACTCATCAGCAGCACTTGGTTGCAACAATGATGGCCCTGCTAACATGCTACCATTTGTGGAAGAAGAAGAAGAAACAAAGGAACCCCTTCATCATCATCAACAAATGCATCAAGTTGAAGAGCAAGGAAACTGGGTTAATGGTAACAATAATGGCATGGTGGAAAATGTTAATGTTAATGGCGGTGGAAATGGTAATGGGAGTTTGAAATCTTTGAGTCTTTCAATGAGTCCTGGTTGTTCTTCAACTTGTCAACAATCAACAAGCCATGTAACAGTTTCATCAACTCATCAGAATCAGATCTCAGCAGGTTCTAATTCTTGCAAGGCCATGGAAGTTGCAAAGAACAAGAGAGGAGGTGGACACAATAATAGTAGCAAGCAAACTGTTCATAGGAAATCCATTGAGACATTTGGTCAAAGGACTTCTCAGTACAGAGGTGTCACAAGGCATAGATGGACCGGCAGATATGAAGCACATTTGTGGGATAATAGCTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGTTTATTTGGGTGGCTATGACATGGAAGAAAAAGCTGCAAGGGCTTATGATCTTGCAGCCCTTAAGTATTGGGGACCTTCAACACATATAAACTTCCCGCTAGAGAATTATCAAAATGAACTTGAAGAAATGAAGAACATGAACAGGCAGGAATATGTTGCACATTTGAGAAGAAAAAGTAGTGGATTTTCAAGGGGAGCTTCAATGTATAGAGGGGTGACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGAAGAGTAGCAGGAAATAAGGATCTTTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCAGAAGCATATGATGTGGCTGCAATCAAATTCAGAGGAGTGAATGCAGTCACAAACTTTGACATTTCAAGATATGATGTTGAAAGGATCATGGCAAGTAACACCCTTCTTGCCGGAGAATTGGCCAGAAGAAACACCAATGAACCGCCGAAGGCGATTGAGGCGGCTCCGGCTCCGGTCCCAGCACCAACATTAGAGTACAATGTTGTAACAACCCACATCATCAACAACAACAACAAGGAATTGCTAGAAGTTGAAGGTTGTAACACCAACACGAACAACATTGAAAATGGTACTTCATCAGATCAATGGAAGAAAATTGGATTGTTGTATCAACAACAATCCAATAACAATAGTAATGGGGTTTGTGGAAGTTACAGAAATTCCCAAAATTTTTGTGGTGGGGCCCTACAAGATCTAATTGGAATTGATTCAGTTGTTGGATCAAGCCATCATCATCATCAAAACCCTAATATGGTGCTAGATGAGTCTAATGCAAAGATGGGAGGGACTACTACTCATTTTTCAAACCCATCTTCACTAGTGACAAGTTTGAGCAACTCATCAAGAGAAGGTAGCCCTGACCACAACAAGAACAACAACAATAGTAATGGTCCCACATCATCACTTCTCTTTCATCAAAACCAAAAGCAACATCATCATCATCATCCAATGCTTTTGCCAAAGGTTAATGTTGTTAGCCCTATTGTTGCCAATAGCACTACTACTAGTGTTGTTGGCTCTAATTGGTTCCCTTCAGCAGCTGCTCAAATTAGGTCTACAACTATGTCTCCCATGCCGATTTTTGCGGCATGGACTGAACCGTAG 2136 0.4064 MCYAENASPFQHSSPSLAMMPLKSDGSLCIMEALTTTSQTHQVMVASSSCSSPKLEDFLGGATMGAHEYGEHEREAMALSLDSIYYNNNYSHHHHQHQNSEAENNNRQQHCSSSSLDLILSDPFKQQGHNNNNSSSNNNHEHEHEHDHDVNQYYSSAALGCNNDGPANMLPFVEEEEETKEPLHHHQQMHQVEEQGNWVNGNNNGMVENVNVNGGGNGNGSLKSLSLSMSPGCSSTCQQSTSHVTVSSTHQNQISAGSNSCKAMEVAKNKRGGGHNNSSKQTVHRKSIETFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNTNEPPKAIEAAPAPVPAPTLEYNVVTTHIINNNNKELLEVEGCNTNTNNIENGTSSDQWKKIGLLYQQQSNNNSNGVCGSYRNSQNFCGGALQDLIGIDSVVGSSHHHHQNPNMVLDESNAKMGGTTTHFSNPSSLVTSLSNSSREGSPDHNKNNNNSNGPTSSLLFHQNQKQHHHHHPMLLPKVNVVSPIVANSTTTSVVGSNWFPSAAAQIRSTTMSPMPIFAAWTEP 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213157g00001 711 ProSiteProfiles AP2/ERF domain profile. 399 457 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 SUPERFAMILY DNA-binding domain 398 459 IPR016177 GO:0003677
Stsc213157g00001 711 SMART rav1_2 297 369 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 SMART rav1_2 399 463 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 MobiDBLite consensus disorder prediction 91 148 - -
Stsc213157g00001 711 FunFam AP2-like ethylene-responsive transcription factor 398 459 - -
Stsc213157g00001 711 ProSiteProfiles AP2/ERF domain profile. 297 363 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 FunFam AP2-like ethylene-responsive transcription factor ANT 296 365 - -
Stsc213157g00001 711 Gene3D AP2/ERF domain 399 459 IPR036955 GO:0003700|GO:0006355
Stsc213157g00001 711 Gene3D AP2/ERF domain 296 365 IPR036955 GO:0003700|GO:0006355
Stsc213157g00001 711 PRINTS Ethylene responsive element binding protein signature 298 309 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 PRINTS Ethylene responsive element binding protein signature 439 459 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 MobiDBLite consensus disorder prediction 584 658 - -
Stsc213157g00001 711 SUPERFAMILY DNA-binding domain 296 365 IPR016177 GO:0003677
Stsc213157g00001 711 CDD AP2 296 363 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 Pfam AP2 domain 400 449 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 Pfam AP2 domain 297 355 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 54 556 - -
Stsc213157g00001 711 MobiDBLite consensus disorder prediction 585 650 - -
Stsc213157g00001 711 CDD AP2 398 459 IPR001471 GO:0003700|GO:0006355
Stsc213157g00001 711 Coils Coil 364 384 - -
Stsc213157g00001 711 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213157g00001 Stsc-Chr213157 1434 7030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213157g00001 1 87 AP2-EREBP Transcription Factor Family AT4G37750 43.820 4.96e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc213157g00001 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213157g00001 K09285 - gmx:100798179 590.112