Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213128g00001 ATGGCCACTCACAACTCACGTTATTCACACATGCGCTACCACCACCGCGACCATGACTACGACGACACAAGCGACCAAGAAGAAGAAGAAGAAGGCGTGAACATCTCCGACAGCGACAGCGAAGAAAGCCAGCAGAAGGAGAATAAGGCGGAAGGAGGAGTTCATCAGGAGGGGCGGTGTGGATGGTGGCTCCGGTGGGGGAAATGGGGGGAGGAGTGGAACAGAGTGATGGTGCTGATGTCAGCAATGGGTCTGTTCGTGGACCCATTGGTGTTGTACGCAGTGTCGATAAGCGAGACATGTATGTGCGTCTTCGTTGATGGGTGGTTGGCCATAACGGTCACCGTGCTCCGCTGCATGACGGATACGTTGCACATCTCCAACATGTGGTTGCAGTTAAAGATGGCAAAACTTTCTCTTCTTACCACTCCTTCTTCTTCTTCTTCAAACTATTCTCTTCGCTTCAGAAAGGCAAAGTGGGCTTTTTTCTTTAATCTCTTTCTCATTCTTCCTCTACCACAGATGGTGCTGTGGGAAGTAATCCCATCATTATTGGAGAAAGGATTGATAACAGTAGCGATGACAGTGTTGTTGATCATGTTCCTCTTCCAATACCTTCCCAAAATTTATCACTCGGTGTGCCTCTTGCGTCGCATGCAAAGCCTCACTGGCTACGTTTTTGGAACTGTTTGGTGGGGCATTGCCCTCAACTTGATCGCTTATTTCGTCGCTTCTCATGCAGCAGGAGCATGTTGGTACTTGCTGGGAGTCCAAAGGGCAGCCAAGTGCCTAAAAGAGCAGTGTATAAAGACAGCTGGTTGTGGAGTGAGAAGCCTATCTTGCAAGCAACATATATATTATGGTTATGGAAGCAGTGAGATGGTGAGGGAGAAGGCAAGGTTGGCTTGGGCAGCAAATAGGGAAGCAAGGTCAACATGCCTTGATGGCCCTGATAACTATGATTATGGTGCTTATAAATGGACCGTACAGCTTGTCACCAATGATAGCCGCTTGGAAAAGATCCTCTTCCCCATCTTTTGGGGCCTCATGACTCTCAGCACATTTGGGAGCCTAGAGAGCACAACAGAATGGCTAGAAGTTGTTTTCAACATTATTGTATTAACTAGTGGCCTTCTCCTAGTTACTATGTTGATTGGAAACATTAAGGTGTTTTTGCATGCTACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAATGTTGAATGGTGGATGAGCAAGAGGCGGTTGCCACAAGGGTTTAGGCAGCGAGTCCGCAACTATGAGCGGCAGAGATGGGCCGCCATGCGAGGAGTTGACGAGTGCCAGATGATCAAAAACCTCCCTGAGGGGCTCAGGAGGGACATCAAGTACCATCTTTGTTTGGATTTGGTTAGACAG 1404 0.4808 MATHNSRYSHMRYHHRDHDYDDTSDQEEEEEGVNISDSDSEESQQKENKAEGGVHQEGRCGWWLRWGKWGEEWNRVMVLMSAMGLFVDPLVLYAVSISETCMCVFVDGWLAITVTVLRCMTDTLHISNMWLQLKMAKLSLLTTPSSSSSNYSLRFRKAKWAFFFNLFLILPLPQMVLWEVIPSLLEKGLITVAMTVLLIMFLFQYLPKIYHSVCLLRRMQSLTGYVFGTVWWGIALNLIAYFVASHAAGACWYLLGVQRAAKCLKEQCIKTAGCGVRSLSCKQHIYYGYGSSEMVREKARLAWAANREARSTCLDGPDNYDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGSLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNVEWWMSKRRLPQGFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213128g00001 468 MobiDBLite consensus disorder prediction 1 53 - -
Stsc213128g00001 468 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 468 - -
Stsc213128g00001 468 FunFam Cyclic nucleotide-gated ion channel 1 398 462 - -
Stsc213128g00001 468 SUPERFAMILY cAMP-binding domain-like 397 468 IPR018490 -
Stsc213128g00001 468 Gene3D Helix hairpin bin 396 462 - -
Stsc213128g00001 468 MobiDBLite consensus disorder prediction 23 37 - -
Stsc213128g00001 468 SUPERFAMILY Voltage-gated potassium channels 70 392 - -
Stsc213128g00001 468 Pfam Ion transport protein 138 389 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213128g00001 Stsc-Chr213128 7163 12447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213128g00001 68 468 Ion Channels AT5G54250 70.803 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213128g00001 K05391 - zju:107430493 669.077