Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213118g00001 ATGAATACGCCACCTGAAAGACGTCGTCAGCTAACATTGGGTTCCTCTAGTCCACCGCCGCACCAATTAGATATCTTTCATGCCCTTGTTCAAAGTACCTTACAAGCTTGGATATTATTTGCAACCTTAGAAGATGAAGATTTTGATGAAAGACGAGGGCAAAAACTTAGAGATTCAAGAAAATTGCCGCCATTAGTAACGTATGAAAGCCAAGATATGCAAGGAAATAATTATAGTGATTGTGCCATCTGCATGGAAAATTTTCAAGATGGGCAAAGTTGTCAAATTTTTCCTGAATGCAAGCACATGTTTCATTCAGATTGTATGGATC 331 0.3867 MNTPPERRRQLTLGSSSPPPHQLDIFHALVQSTLQAWILFATLEDEDFDERRGQKLRDSRKLPPLVTYESQDMQGNNYSDCAICMENFQDGQSCQIFPECKHMFHSDCMD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213118g00001 110 SUPERFAMILY RING/U-box 80 110 - -
Stsc213118g00001 110 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 53 110 - -
Stsc213118g00001 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 110 IPR013083 -
Stsc213118g00001 110 Pfam RING-like zinc finger 80 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213118g00001 Stsc-Chr213118 3029 3359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213118g00001 48 110 C3H Transcription Factor Family AT2G27940 36.508 2.09e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213118g00001 - - gmx:102660073 108.612