Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213106g00002 ATGGAGGCCAGGATCTCTTCCTCTCTTGGCCTCCCTTCTCCCAATCCCCACCGTCACCCAACCGATTTCCCCTCCATCCTCAATCACTTCGCCGCCACCGCCACAAACCCCCCTTTCGCTTCCACAACCGCCACCGCCACATATCCCACCACTCACAACTCCAAATGGATCCGGCCCACTTCAAAGCCCATCCCAAAGGCCCAAACTTTGCTCAAAAACCTCACCGTAGCTGAGCGCGCACTCATCGGCGCAGCCGGCGGCGGAATCGCCGGCGCCTTCACCTACGTCTGCCTCCACCCTCTCGACACAATCAAGACCAAGATGCAAACCAAAGGAGCATCCCAAATTTACAAAAATGCCCTTGACGCGGTCGTGAAGACCTTCCAGCAAAAGGGTATTCTTGGATTCTACAGTGGCGTTTCCGCGGTTATTGTTGGATCCACCGCTTCTTCTGCTGTGTATTTCGGAACCTGTGAGTTCGGTAAGTCATTTCTATCCAAAATTGAAGGGTTCCCTTCTGTGTTGATTCCACCTAGTGCTGGTGCAATGGGGAACATTGTTTCTTCTGCTATAATGGTTCCTAAGGAATTGATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGATGGGTTTTTAGGGTTATATGCTGGTTACTCTGCTACTTTGCTTAGGAATTTACCTGCTGGGGTTTTGAGTTATTCCTCATTTGAGTATTTGAAAGCTGCTGTTTTGAACACTACTAAGAAGTCTCACTTGGAGCCTGTTCAGAGTGTGCTTTGTGGCGCGCTTGCCGGCGCGATTTCGGCTTCTGTAACTACTCCTTTGGATGTGGTGAAGACAAGGTTGATGACTCAGGTTCATGGAGATGCTGTGAACAAGGCTGCTGCTGTTGTGTACGGCGGGGTTTCGGCGACGGTGAAGCAGATACTGAAGGAGGAAGGGTGGGTTGGGTTTACCCGCGGAATGGGGCCTAGAGTTCTTCATAGTGCTTGCTTTTCGGCATTGGGTTACTTTGCATTTGAAACTGCTAGGCTCACTATACTGCAACAATATCTGAGGCAGAAGGAGTTGAGCGAAGTGCCTGCTTCTCCTAGCTGA 1140 0.4772 MEARISSSLGLPSPNPHRHPTDFPSILNHFAATATNPPFASTTATATYPTTHNSKWIRPTSKPIPKAQTLLKNLTVAERALIGAAGGGIAGAFTYVCLHPLDTIKTKMQTKGASQIYKNALDAVVKTFQQKGILGFYSGVSAVIVGSTASSAVYFGTCEFGKSFLSKIEGFPSVLIPPSAGAMGNIVSSAIMVPKELIXXXXXXXXXXXXXXXXXXXXXXXKDGFLGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLNTTKKSHLEPVQSVLCGALAGAISASVTTPLDVVKTRLMTQVHGDAVNKAAAVVYGGVSATVKQILKEEGWVGFTRGMGPRVLHSACFSALGYFAFETARLTILQQYLRQKELSEVPASPS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213106g00002 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 172 256 IPR018108 -
Stsc213106g00002 379 FunFam protein MITOFERRINLIKE 1, chloroplastic 215 378 - -
Stsc213106g00002 379 SUPERFAMILY Mitochondrial carrier 81 355 IPR023395 -
Stsc213106g00002 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 78 164 IPR018108 -
Stsc213106g00002 379 Coils Coil 198 198 - -
Stsc213106g00002 379 PRINTS Mitochondrial carrier protein signature 96 110 IPR002067 GO:0055085
Stsc213106g00002 379 PRINTS Mitochondrial carrier protein signature 146 166 IPR002067 GO:0055085
Stsc213106g00002 379 PRINTS Mitochondrial carrier protein signature 275 297 IPR002067 GO:0055085
Stsc213106g00002 379 PRINTS Mitochondrial carrier protein signature 83 96 IPR002067 GO:0055085
Stsc213106g00002 379 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 60 372 - -
Stsc213106g00002 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 266 360 IPR018108 -
Stsc213106g00002 379 MobiDBLite consensus disorder prediction 1 24 - -
Stsc213106g00002 379 FunFam Protein MITOFERRINLIKE 1, chloroplastic 51 204 - -
Stsc213106g00002 379 Coils Coil 222 223 - -
Stsc213106g00002 379 Pfam Mitochondrial carrier protein 85 167 IPR018108 -
Stsc213106g00002 379 Pfam Mitochondrial carrier protein 265 361 IPR018108 -
Stsc213106g00002 379 Gene3D Mitochondrial carrier domain 216 377 IPR023395 -
Stsc213106g00002 379 Gene3D Mitochondrial carrier domain 21 202 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213106g00002 Stsc-Chr213106 3978 5500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213106g00002 41 358 Chloroplast and Mitochondria Gene Families AT2G30160 28.529 1.87e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213106g00002 K15111 - gmx:100805903 502.671