Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213097g00001 ATGTATCCCACAAACTCCTACGGCAAAGTTAACGAATCCGAGAAGGCAGCACTTGAATCTCGCCGGAAATCTCGCAAGCGAATAACAATCATGGTTCTGTCCACAATAGTCCTTGTTGCCGTGATCTGTGCGGCGGTTTTAGGAGCCGTCGCACACAGCAGCAGCAAGAACAACAACGACAACAACAACAACGCCCTTTCAAATTCAGTTAAGGCTGTTTGTGACGTGACATTGTATAAAGAAACATGTTACAGCAGCCTCAGTGCTCTTGTGCACTCATCAGGGAAAGAACAGGTTCTTGATCCGGAGGAGTTGTTCTTCTTGTCAGTTAAAGTGGCATTAGCTGAGGAAGCTTTGAATAATTGCCAAGATCTGTTGGGTCTCACTATTGATCATCTTAATAGCACTGTGGGTTATTCCTGGCAAAAGTCTTCTTTGGAGGATCTTAAAACTTGGTTGAGTGCTGCAGGCAGTTACCAGGAGGCATGTATTGATGGTGTTGTTGATGAGGAAAATGAATTATTGGTGACAAGCATTGTAAGCTATCTAAAAAGCTCAACAGAGTTGACAAGTAACAGCCTTGCCATCGTTACATGGATTAACAAGGCAGTAACCACAATGAACTTGAACAGGCGGCGGCGCCGCTTGTTGACTTTCCAACAGAGTAATGACCGGAAGCTGTTGCTTCAAAACAATTATGACTACTTGAAGGTGAAAGCAGACATTGTTGTCGCAAAAGGTGGAACTGCGAAATATAAGATTATTTCGGCTGCACTTAAACATGTTCCTGGAGAAAGTGAGAAGAGGACTGTGATCTATGTCAAGAAAGGGATTTACTATGAAAATGTTAGGGTGGAGAAGAACAAATGGAATGTCATGATTATTGGTGATGGAATGAATGCCACTATTGTGTCTGGTAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACATTTGCCGTGTTTGGGAGAAATTTCATTGCTAGGGACATTGGGTTCAGAAACACAGCAGGTCCACAGAAGCATCAGGCAGTGGCACTACTAACAAGTGCAGATCAAGCAATTTACTACAGATGCCTAATTGATGGATTTCAAGACACACTCTACGTTCAGGCAAATCGCCAATTCTACACAGAATGCAACATTTATGGCACCGTGGATTTCATATTCGGAAACTCGGCGGTGGTGATTCAAAACTCCAATATCCTTCCAAAGGTACCCATGCAAGGGCAGCAGAACACCATCACAGCACAAGGGAAATCTGATCCGAACATGAACACCGGAATCTCCATCCAGAACTGCAGCATTCTTCCTTCTTCTGCCGGTTTAACTTCCGTCCAAACCTACTTGGGCAGGCCATGGAAGAATTACTCAACCACCGTTTTCATGCAATCAACCATTCAAAGTTTCATTGATCCGAAAGGGTGGTTACCATGGGTAGGGAACTCAGCACCATACACCATATTTTATGCTGAGTTTGAGAATGTTGGACCAGGTTCTTCAACGAAGAATAGGGTGAAGTGGAAGGGTGTGAAACTGCCATTAACAACAAACAAGCTAACTTATTTACTGTTAAAGAATTTATTTCCGGGACAGATGGATTCCGGCCACCGGTGTGGCGTTTAA 1635 0.4373 MYPTNSYGKVNESEKAALESRRKSRKRITIMVLSTIVLVAVICAAVLGAVAHSSSKNNNDNNNNALSNSVKAVCDVTLYKETCYSSLSALVHSSGKEQVLDPEELFFLSVKVALAEEALNNCQDLLGLTIDHLNSTVGYSWQKSSLEDLKTWLSAAGSYQEACIDGVVDEENELLVTSIVSYLKSSTELTSNSLAIVTWINKAVTTMNLNRRRRRLLTFQQSNDRKLLLQNNYDYLKVKADIVVAKGGTAKYKIISAALKHVPGESEKRTVIYVKKGIYYENVRVEKNKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGRNFIARDIGFRNTAGPQKHQAVALLTSADQAIYYRCLIDGFQDTLYVQANRQFYTECNIYGTVDFIFGNSAVVIQNSNILPKVPMQGQQNTITAQGKSDPNMNTGISIQNCSILPSSAGLTSVQTYLGRPWKNYSTTVFMQSTIQSFIDPKGWLPWVGNSAPYTIFYAEFENVGPGSSTKNRVKWKGVKLPLTTNKLTYLLLKNLFPGQMDSGHRCGV 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213097g00001 544 SMART PMEI_2 65 196 IPR006501 GO:0004857
Stsc213097g00001 544 Pfam Pectinesterase 241 522 IPR000070 GO:0030599|GO:0042545
Stsc213097g00001 544 SUPERFAMILY Pectin lyase-like 238 535 IPR011050 -
Stsc213097g00001 544 CDD PMEI-like_3 72 202 - -
Stsc213097g00001 544 Gene3D - 235 540 IPR012334 -
Stsc213097g00001 544 Pfam Plant invertase/pectin methylesterase inhibitor 69 196 IPR006501 GO:0004857
Stsc213097g00001 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 200 IPR035513 -
Stsc213097g00001 544 FunFam Pectinesterase 235 536 - -
Stsc213097g00001 544 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Stsc213097g00001 544 PANTHER PECTINESTERASE 34 522 - -
Stsc213097g00001 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 202 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213097g00001 Stsc-Chr213097 2007 5486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213097g00001 4 534 Carbohydrate Esterase AT3G10710 52.228 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213097g00001 - - gmx:100808802 684.871