Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213039g00002 ATGGGCAACTGCTGCAGATCTCCGGCCGCCGTCGCCCGCGAGGACGTCAAATCCAGCTTCTCTGACCATCACGCTAAGCGTGCCGCTGCTGGAGACTCCTCCGCCGCCGGAGGCACCGGTGGGAAGAAGAAGCCTCCTCCGATCACCGTCCTAACCGGCGTGCCCAAAGAGAACATCGAGGACCGGTACCTGGTGGACCGCGAGCTCGGCCGTGGCGAGTTCGGAGTGACATACCTCTGCATCGACCGCGAGACGCGCGAACTGCTCGCGTGCAAGAGCATCTCGAAGCGGAAGCTCCGCACCGCCGTGGACGTTGAGGACGTCCGCCGCGAGGTGGCCATCATGCGCCACCTGCCGCGGAGCCCGTCCATCGTGTCGCTCCGGGAGGCCTGCGAGGACGACAATGCAGTCCATCTCGTCATGGAGCTGTGTGAGGGCGGCGAGCTCTTTGACCGCATCGTCGCCAGGGGTCATTACACGGAGAGGGCGGCTGCAGCAGTTGCACGGACCATCGTGGAGGTAGTGCAGCTTTGCCACAAGCACGGGGTGATCCACAGGGACCTCAAGCCAGAGAATTTCTTGTTTGCTAACAAGAAGGAGAACTCGCCTCTCAAGGCTATTGATTTTGGATTGTCCATATTCTTCAAGCCAGGTGAGAGGTTCTCAGAAATCGTTGGAAGTCCTTATTATATGGCTCCAGAGGTGCTCAAGCGGAACTATGGGCCAGAGATAGATATATGGAGTGCGGGAGTGATTCTCTATATCTTATTGTGTGGTGTTCCCCCATTTTGGGCCGAATCTGAACAAGGGGTTGCACAGGCCATTCTTCGTGGGCTGATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAGGCAAATGTTAGAACCAGACCCTAAGCTTCGATTAACTGCCAAACAAGTGCTCGAGCATCCTTGGCTACAAAATGCTAAAAAGGCTCCTAATGTTCCACTTGGAGATGTCGTTAAGTCAAGGCTTAAGCAGTTTTCAATGATGAACAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCTAATGAAGAAGTTGAAGATATCAAAGATATGTTCAAGAAAATGGACAGTGATAATGATGGTATTGTTTCCATTGAAGAATTGAAAGCTGGATTTCGAAATTTTGGATCCCAACTTGCTGAGTCTGAAGTTCAGATGTTTATTGAGGCTGTAGATAATAACGGGAAGGGAACACTTGACTATGGAGAATTTGTTGCTGTTTCTCTTCATTTAAAAAGGATGGCTAATGATGAGCATCTTCGCAAGGCTTTCTCATATTTTGACAAGGATGGGAATGGATATATTGAACCTGAAGAGCTACGAAATGCATTAATGGAAGATGGAGATGATTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACGGACAAGGATGGACGTATCAGCTACGATGAGTTTGTGGCTATGATGAAAACTGGAACGGATTGGCGGAAAGCATCTAGGCATTATTCCCGCGGTAGATTCAACAGCTTGAGCTTGAAATTGATGAAAGATGNNNNNNNNNNCGAGCCATTATCTTGA 1611 0.491 MGNCCRSPAAVAREDVKSSFSDHHAKRAAAGDSSAAGGTGGKKKPPPITVLTGVPKENIEDRYLVDRELGRGEFGVTYLCIDRETRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPRSPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVARTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDSDNDGIVSIEELKAGFRNFGSQLAESEVQMFIEAVDNNGKGTLDYGEFVAVSLHLKRMANDEHLRKAFSYFDKDGNGYIEPEELRNALMEDGDDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDXXXXEPLS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213039g00002 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 496 - -
Stsc213039g00002 536 SUPERFAMILY EF-hand 350 527 IPR011992 -
Stsc213039g00002 536 CDD EFh 440 501 IPR002048 GO:0005509
Stsc213039g00002 536 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Stsc213039g00002 536 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Stsc213039g00002 536 Gene3D Phosphorylase Kinase; domain 1 64 148 - -
Stsc213039g00002 536 ProSiteProfiles EF-hand calcium-binding domain profile. 474 506 IPR002048 GO:0005509
Stsc213039g00002 536 MobiDBLite consensus disorder prediction 16 49 - -
Stsc213039g00002 536 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Stsc213039g00002 536 SUPERFAMILY Protein kinase-like (PK-like) 48 346 IPR011009 -
Stsc213039g00002 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Stsc213039g00002 536 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Stsc213039g00002 536 Gene3D - 330 504 - -
Stsc213039g00002 536 FunFam Calcium-dependent protein kinase 7 330 504 - -
Stsc213039g00002 536 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Stsc213039g00002 536 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213039g00002 536 CDD STKc_CAMK 62 320 - -
Stsc213039g00002 536 FunFam Calcium-dependent protein kinase 1 65 148 - -
Stsc213039g00002 536 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Stsc213039g00002 536 Gene3D Transferase(Phosphotransferase) domain 1 149 329 - -
Stsc213039g00002 536 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Stsc213039g00002 536 SMART efh_1 368 396 IPR002048 GO:0005509
Stsc213039g00002 536 SMART efh_1 404 432 IPR002048 GO:0005509
Stsc213039g00002 536 SMART efh_1 475 503 IPR002048 GO:0005509
Stsc213039g00002 536 SMART efh_1 440 468 IPR002048 GO:0005509
Stsc213039g00002 536 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213039g00002 536 Pfam EF-hand domain pair 439 501 IPR002048 GO:0005509
Stsc213039g00002 536 Pfam EF-hand domain pair 367 427 IPR002048 GO:0005509
Stsc213039g00002 536 Pfam Protein kinase domain 65 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213039g00002 536 FunFam calcium-dependent protein kinase 13 149 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213039g00002 Stsc-Chr213039 3307 8461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213039g00002 1 528 EF-hand Containing Proteins AT1G74740 68.998 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc213039g00002 Pkinase 2.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213039g00002 K13412 - gmx:100783922 968.763