Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213003g00002 ATGTTTCATATTCATATCAAAATCATTTCTCCGACCTCGCAAAAACTGGTTTCTTCGCTAAGCCGCAATCCATGGCTATGGCTTCCTCCGAGACTCATCTCAACCTCGTCTCCTTCTTCAAGCTCCCAAGGCAGCGCTTTTGCATTCTCTTACCTAACTGACACTTGTGGCCTCTCACCAGAACGCGCTATCACCCTTTCCAAGCGCCTCAAGTTAGAATCAAGTGAAAGACCAGAAGCGGTGATTGAGTTCTTCAAGAACCAAGGTTTGTCCCAAACTGTGACCTCGAAAATCTTTCGAACTGTTCCAGATTTACTCTTAGCCAACGCCCAGAAAACTTTGAAGCCAAAGTTAGATTTTTTGAAGTCAAAAGGGTTTTCTACCTCTGACATTCACAGCATCTTATTAGATTTCCCTGAGCTTCTCAGAAGAAGCTTGAAGAATGAGATAATTCCCTGCTTCGATTTCTTGGACAATATGTTTCAATGTAAGAACAGGCTAAGGAAAACTGTTGTAAGCCATTCATGTGTTCTTTATGACATTGCCAAACGTATGGAACCTAATATCAAACTGTTGAGAGAAGAGGGTGTTCCTGAATCACATATTGTTAGGTTTTTAGAATACTACCCCAATACATTGAAGTCATGGCCCGCACAATTTAAGAAGGCGGTGCTGGAAGTGAAGGGGATGGAGATTGATCCATTGAAGTTGCAATTTGTTATACTTGTTCATGTGAAGTTACGCCTGAGCAAATCCACATGGGCAAGGAAGGAAGGTATATATAGAAAATGGGGTTGGACCGACAATGATATTTCTGCTGCGTTTAGAGTCCACCCGTTCTGTATGTGCTCTTCAGACAGTAAGATTGAGGAGGTCATGGATATCCTGGTGAACACATTGGGCTGCAAATCTTCCGACATTCTCAAGTGTCCATCGGTTTTGACCATGAGCTTGAGAAAGCGAATTATTCCAAGGGGCTCTGTTGTTAGAGCTTTGATGTCAAAGGGTCTGATTAACAAGCTGAGCTGGACTGCATTTCGGTATAATGAATTGAAGTTCCTGGATAAGTATGTCCATTGTTATGACAAGGAAGCCAATGAGCTATTGAAGTTGTATAAGGCTAAATTGGCTTAA 1134 0.4206 MFHIHIKIISPTSQKLVSSLSRNPWLWLPPRLISTSSPSSSSQGSAFAFSYLTDTCGLSPERAITLSKRLKLESSERPEAVIEFFKNQGLSQTVTSKIFRTVPDLLLANAQKTLKPKLDFLKSKGFSTSDIHSILLDFPELLRRSLKNEIIPCFDFLDNMFQCKNRLRKTVVSHSCVLYDIAKRMEPNIKLLREEGVPESHIVRFLEYYPNTLKSWPAQFKKAVLEVKGMEIDPLKLQFVILVHVKLRLSKSTWARKEGIYRKWGWTDNDISAAFRVHPFCMCSSDSKIEEVMDILVNTLGCKSSDILKCPSVLTMSLRKRIIPRGSVVRALMSKGLINKLSWTAFRYNELKFLDKYVHCYDKEANELLKLYKAKLA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213003g00002 377 FunFam Mitochondrial transcription termination factor-like 146 365 - -
Stsc213003g00002 377 SMART mt_12 168 198 IPR003690 GO:0003690|GO:0006355
Stsc213003g00002 377 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Stsc213003g00002 377 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Stsc213003g00002 377 SMART mt_12 132 164 IPR003690 GO:0003690|GO:0006355
Stsc213003g00002 377 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Stsc213003g00002 377 Gene3D Transcription termination factor 3, mitochondrial 163 371 IPR038538 -
Stsc213003g00002 377 Pfam mTERF 82 212 IPR003690 GO:0003690|GO:0006355
Stsc213003g00002 377 Pfam mTERF 247 344 IPR003690 GO:0003690|GO:0006355
Stsc213003g00002 377 PANTHER CGI-12 PROTEIN-RELATED 47 362 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213003g00002 Stsc-Chr213003 8216 9349 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc213003g00002 mTERF 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213003g00002 K15031 - qsa:O6P43_003532 301.212