Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213003g00001 ATGCCGAAACGCTTGTGGAATCGAGGGGGCTATGGATTTTCTGATGAACAAACTTCTGCAAGGCTTCTGCTACTGCCAGGCAGCTGGACCGTTTCGTCAGCCACACCACCATGGCCATGGCTTTCTTCCAGACTCTTCTCAACCTCATCTCTTCCATCTTTAACTTCCACCGATAAATCTTTCATGCTCTCCTACCTAATCGGCACCTGCGGCTTCCCGCCGAGAACCGCCGCTTCGGTTTCCAACCGCCTCACCTTCGAAACGAGCGAAAAACCAGACGCTGTGGTCGCGTTCTTCAAGAGCCATGGTTTATCGGAAACGACGGCGTTTAAGGTCCTCCGATTCACGCCAAGGTTACTCCTTGCAAATCCCGAGAGAACTTTGCAGCCGAAAATCGATTTCTTCAAGTCCAAAGGGTTTTCAACCTCCGACATATGCAAAATCATTGTAGGTTGGCCTCCAATCCTCACTCGAAGTTTGCAGAACGAGATCATTCCGTGCTTTGATTTCTTGGAGAGTATGATTCTGTCGAAGGAGATGCTTTTGAGAACTGTGATTCGCTATTCTGGTGTTCTCTGTGATCTTGAAACCTGTATTATACCTAATGTGAAACTGCTGAGAGATGCAGGAGTTCCTGAATCTCTTATTGTTAAGTTTATACAATACTTTCCGCATTCGCTGAAGGCTCCTTCGAAGAAATTCAAGGAGACGGTGAAGGAGGCGAAGGAGATGGAGCTTGATCCTTTGAGGTTGCAGTTTCTTATAGTTGTTCATGTCATGTCAAACGTCTCCAAAACCACCTGGGCAAGGAGGGAAGGTATATTTAGAAGATGGGGTTGGACTGATGAAGATATCTCTGCAGCATTTAGAGTCCACCCGTTCATCATGTCGGCTTCGGACAACAAAATTGAGGCGATCATGGATTTTCTGGTGAATACAGTGGGCTACAAGTCTTCGGATATTGCCAGGTGTCCGTCGGTATTGTCCATGAGCTTGGAAAAGCGAGTTGTTCCGAGGGGCTATGTTGTTTTAGCTTTGATGTCAAAGGGTCTGATAAATAAGATTAGCTTGAGTTCAATATTTCAGCACAAAGAATCGATTTTCTTGGATAAGTTTGTCCATCGCCATGAGAAGGATGCCAATGAGCTATTGAAGCTGTATAGAGCTAAATTGACATAA 1179 0.4572 MPKRLWNRGGYGFSDEQTSARLLLLPGSWTVSSATPPWPWLSSRLFSTSSLPSLTSTDKSFMLSYLIGTCGFPPRTAASVSNRLTFETSEKPDAVVAFFKSHGLSETTAFKVLRFTPRLLLANPERTLQPKIDFFKSKGFSTSDICKIIVGWPPILTRSLQNEIIPCFDFLESMILSKEMLLRTVIRYSGVLCDLETCIIPNVKLLRDAGVPESLIVKFIQYFPHSLKAPSKKFKETVKEAKEMELDPLRLQFLIVVHVMSNVSKTTWARREGIFRRWGWTDEDISAAFRVHPFIMSASDNKIEAIMDFLVNTVGYKSSDIARCPSVLSMSLEKRVVPRGYVVLALMSKGLINKISLSSIFQHKESIFLDKFVHRHEKDANELLKLYRAKLT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213003g00001 392 Gene3D Transcription termination factor 3, mitochondrial 160 386 IPR038538 -
Stsc213003g00001 392 PANTHER CGI-12 PROTEIN-RELATED 61 377 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 SMART mt_12 318 352 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 SMART mt_12 182 212 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 SMART mt_12 110 141 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 SMART mt_12 146 177 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 SMART mt_12 217 247 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 Pfam mTERF 163 368 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 Pfam mTERF 97 220 IPR003690 GO:0003690|GO:0006355
Stsc213003g00001 392 FunFam Mitochondrial transcription termination factor-like 160 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213003g00001 Stsc-Chr213003 4167 7362 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc213003g00001 mTERF 2.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213003g00001 K15031 - qsa:O6P43_003532 340.117