Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212947g00001 ATGTATCACAAGGCTTGGAAACAAATTTGTGAAATTAGTATAACTGAATTCCACAGGGTTTATGAACCGTTTGATATTCAATTGGAGGAAAGGGTGGCTGATTTTGGATTGGCTAAGTTGACTATTGATAATAACACTCATGTATCAACTCGTGTCATGGGAACATTCGGGTACTTAGCTTCTGAATATGCATCAAGTGGAAAATTGATAGAGAAGTCTGATGTATTCTCGTTTGGAGTGAAGGTGGAGTGTCCCCAATGA 261 0.3831 MYHKAWKQICEISITEFHRVYEPFDIQLEERVADFGLAKLTIDNNTHVSTRVMGTFGYLASEYASSGKLIEKSDVFSFGVKVECPQ 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212947g00001 86 Pfam Protein tyrosine and serine/threonine kinase 31 80 IPR001245 GO:0004672|GO:0006468
Stsc212947g00001 86 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 25 81 - -
Stsc212947g00001 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212947g00001 86 SUPERFAMILY Protein kinase-like (PK-like) 29 80 IPR011009 -
Stsc212947g00001 86 Gene3D Transferase(Phosphotransferase) domain 1 12 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212947g00001 Stsc-Chr212947 7582 9266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212947g00001 18 80 Trihelix Transcription Factor Family AT1G26150 67.164 1.39e-23 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc212947g00001 PK_Tyr_Ser-Thr 4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212947g00001 - - ccaj:109792152 97.4413