Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212928g00003 ATGGGGAACACTTGTGTTGGACCTAGCATTAAAAATGGTTTTCTTCAGTCAGTTTCTGCAGCAATGTGGAGGTCGCAATCACCGGATGAATCGGTATCCAATCGAGAAAGTGTAAAGGAGGAAGCAACCAATGAACCCGAATCTCCGTTGCCTGTCCAGAACAAACCTCCTGAGCAGTTAACTATGGCAAAACCAGAATCAAAAGAAAAAACAAAACCAGAAACAAAGTCAGAAGTGGAAAAGGAACCGGAGCAGGAGAAACAGGAGAAGAATAAACACAGGAAACCAGCTTCAGTGAAGAGAGTTTCGAGTGCTGGGCTTCGTGTCGATTCTGTTTTACAAAGAGAGACCGGTAGTTTCAAGGAGTTCTACAGTTTGGGAAGAAAACTTGGACAGGGTCAGTTTGGGACAACATTTTTATGTGTTGAGAAGGCAACAGGACATGAATTTGCTTGTAAGTCCATTGCAAAGAGAAAGCTGGTAACTGACGAGGATGTCGAGGATGTGAGGAGAGAAATTCAGATAATGCACCACCTGTCTGGGCATCCCAATGTTATTTCCATTAAAGGTGCTTATGAGGATGCGATTGCGGTTTACGTTGTGATGGAACTATGTGCAGGTGGTGAGCTTTTCGATAGGATTATTCAGCGTGGACACTACACTGAAAGAAAGGCCGCTGATCTTATTCGGACCATAGTTGGGGTTGTGGAAGCTTGTCATTCTCTTGGTGTGATGCATAGAGACCTTAAACCTGAGAATTTTCTATTTGTGAATCAACACGAGGATGCACTTCTCAAAACCATTGACTTCGGATTATCGGTGTTCTTTAAGCCAGGTGATATATTTAATGATGTGGTTGGCAGCCCATATTATGTTGCCCCAGAAGTTCTGCGAAAGAGGTACGGTCCTGAAGCGGATGTTTGGAGTGCTGGAGTTATCCTGTATATTCTTTTGAGTGGAGTTCCTCCTTTTTGGGCAGAAAATGAACAAGGAATATTCGAACAGGTTCTGCGTGGTGATCTTGATTTCTCGTCAGATCCCTGGCCTGCGATTTCAGAAAGCGCCAAAGATTTAGTAAGGAAAATGCTTGTTCGTGATCCTAGAAGGCGGATGACTGCCCATCAAGTACTATGTCATCCATGGATTCAAGTTGATGGTGTTGCCCCTGACAAGCCACTTGATTCTGCTGTGTTAAGTCGCCTGAAACAATTTTCTGCTATGAATAAACTCAAGAAAATGGCTCTTATAGTTATTGCTGAGAGCTTATCCGAAGAAGAAATAGCTGGCTTGAAGGAAATGTTCAAGATGATAGATACAGACAACAGTGGTCAAATAACTTTTGAAGAACTTAAAGCTGGCTTGAAAAGAGTTGGTGCTAATCTTAAGGAGTCTGAGATCTATGATTTAATGCAAGCAGCTGATGTAGATAACAGTGGAACAATTGATTATGGCGAGTTCATTGCTGCAACCTTGCATCTTAACAAGATTGAAAGAGAAGATCATTTATTTGCAGCCTTTTCATACTTCGATAAAGATGGAAGTGGTTATATTACCCAAGATGAACTTCAACAGGCTTGTGATGAGTTTGGCATTGAAGATGCCCGCTTGGAAGAGATAATCAAGGAAATTGATCAGGATAATGATGGGCGCATAGATTATAATGAGTTTGTGGCCATGATGCAGAATGGAAATCTTCCTATGGTTGGTAGAAAGGGCCTAGAACATAGCTTCAGCATTGGTTTCAGGGAGGCATTAAAACTATAA 1764 0.4201 MGNTCVGPSIKNGFLQSVSAAMWRSQSPDESVSNRESVKEEATNEPESPLPVQNKPPEQLTMAKPESKEKTKPETKSEVEKEPEQEKQEKNKHRKPASVKRVSSAGLRVDSVLQRETGSFKEFYSLGRKLGQGQFGTTFLCVEKATGHEFACKSIAKRKLVTDEDVEDVRREIQIMHHLSGHPNVISIKGAYEDAIAVYVVMELCAGGELFDRIIQRGHYTERKAADLIRTIVGVVEACHSLGVMHRDLKPENFLFVNQHEDALLKTIDFGLSVFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFSSDPWPAISESAKDLVRKMLVRDPRRRMTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAESLSEEEIAGLKEMFKMIDTDNSGQITFEELKAGLKRVGANLKESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKIEREDHLFAAFSYFDKDGSGYITQDELQQACDEFGIEDARLEEIIKEIDQDNDGRIDYNEFVAMMQNGNLPMVGRKGLEHSFSIGFREALKL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212928g00003 587 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Stsc212928g00003 587 ProSitePatterns EF-hand calcium-binding domain. 544 556 IPR018247 -
Stsc212928g00003 587 ProSitePatterns Protein kinases ATP-binding region signature. 130 157 IPR017441 GO:0005524
Stsc212928g00003 587 ProSiteProfiles EF-hand calcium-binding domain profile. 531 566 IPR002048 GO:0005509
Stsc212928g00003 587 FunFam CDPK-related kinase 3 116 284 - -
Stsc212928g00003 587 Gene3D Transferase(Phosphotransferase) domain 1 210 406 - -
Stsc212928g00003 587 FunFam Calcium-dependent protein kinase SK5 292 387 - -
Stsc212928g00003 587 CDD STKc_CAMK 123 381 - -
Stsc212928g00003 587 ProSiteProfiles EF-hand calcium-binding domain profile. 497 530 IPR002048 GO:0005509
Stsc212928g00003 587 MobiDBLite consensus disorder prediction 21 103 - -
Stsc212928g00003 587 ProSiteProfiles Protein kinase domain profile. 124 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212928g00003 587 Gene3D Phosphorylase Kinase; domain 1 126 209 - -
Stsc212928g00003 587 SUPERFAMILY Protein kinase-like (PK-like) 123 383 IPR011009 -
Stsc212928g00003 587 CDD EFh 501 561 IPR002048 GO:0005509
Stsc212928g00003 587 Pfam EF-hand domain pair 430 490 IPR002048 GO:0005509
Stsc212928g00003 587 Pfam EF-hand domain pair 500 561 IPR002048 GO:0005509
Stsc212928g00003 587 PANTHER SERINE/THREONINE-PROTEIN KINASE 115 556 - -
Stsc212928g00003 587 SMART serkin_6 124 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212928g00003 587 SMART efh_1 535 563 IPR002048 GO:0005509
Stsc212928g00003 587 SMART efh_1 465 493 IPR002048 GO:0005509
Stsc212928g00003 587 SMART efh_1 501 529 IPR002048 GO:0005509
Stsc212928g00003 587 SMART efh_1 429 457 IPR002048 GO:0005509
Stsc212928g00003 587 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Stsc212928g00003 587 Pfam Protein kinase domain 124 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212928g00003 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Stsc212928g00003 587 Gene3D - 407 566 - -
Stsc212928g00003 587 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Stsc212928g00003 587 MobiDBLite consensus disorder prediction 62 93 - -
Stsc212928g00003 587 FunFam Calcium-dependent protein kinase 1 126 209 - -
Stsc212928g00003 587 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Stsc212928g00003 587 SUPERFAMILY EF-hand 422 561 IPR011992 -
Stsc212928g00003 587 FunFam Calcium-dependent protein kinase 1 390 564 - -
Stsc212928g00003 587 CDD EFh 430 489 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212928g00003 Stsc-Chr212928 2294 8843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212928g00003 1 582 EF-hand Containing Proteins AT5G04870 77.941 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc212928g00003 Pkinase 5.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212928g00003 K13412 - gmx:100797449 1030.78