Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212928g00002 ATGCAGTTCCTCAACAACTCACCTGGTCAACTCAAGTCAGTTTCTGCAGCAATGTGGAGGTCGCAATCACCGGATGAATCGGTATCCAATCGAGAAAGTGTAAAGGAGGAAGCAACCAATGAACCCGAATCTCCGTTGCCTGTCCAGAACAAACCTCCTGAGCAGTTAACTATGGCAAAACCAGAATCAAAAGAAAAAACAAAACCAGAAACAAAGTCAGAAGTGGAAAAGGAACCGGAGCAGGAGAAACAGGAGAAGAATAAACACAGGAAACCAGCTTCAGTGAAGAGAGTTTCGAGTGCTGGGCTTCGTGTCGATTCTGTTTTACAAAGAGAGACCGGTAGTTTCAAGGAGTTCTACAGTTTGGGAAGAAAACTTGGACAGGGTCAGTTTGGGACAACATTTTTATGTGTTGAGAAGGCAACAGGACATGAATTTGCTTGTAAGTCCATTGCAAAGAGAAAGCTGGTAACTGACGAGGATGTCGAGGATGTGAGGAGAGAAATTCAGATAATGCACCACCTGTCTGGGCATCCCAATGTTATTTCCATTAAAGGTGCTTATGAGGATGCGATTGCGGTTTACGTTGTGATGGAACTATGTGCAGGTGGTGAGCTTTTCGATAGGATTATTCAGCGTGGACACTACACTGAAAGAAAGGCCGCTGATCTTATTCGGACCATAGTTGGGGTTGTGGAAGCTTGTCATTCTCTTGGTGTGATGCATAGAGACCTTAAACCTGAGAATTTTCTATTTGTGAATCAACACGAGGATGCACTTCTCAAAACCATTGACTTCGGATTATCGGTGTTCTTTAAGCCAGGTGATATATTTAATGATGTGGTTGGCAGCCCATATTATGTTGCCCCAGAAGTTCTGCGAAAGAGGTACGGTCCTGAAGCGGATGTTTGGAGTGCTGGAGTTATCCTGTATATTCTTTTGAGTGGAGTTCCTCCTTTTTGGGCAGAAAATGAACAAGGAATATTCGAACAGGTTCTGCGTGGTGATCTTGATTTCTCGTCAGATCCCTGGCCTGCGATTTCAGAAAGCGCCAAAGATTTAGTAAGGAAAATGCTTGTTCGTGATCCTAGAAGGCGGATGACTGCCCATCAAGTACTATGTCATCCATGGATTCAAGTTGATGGTGTTGCCCCTGACAAGCCACTTGATTCTGCTGTGTTAAGTCGCCTGAAACAATTTTCTGCTATGAATAAACTCAAGAAAATGGCTCTTATAGTTATTGCTGAGAGCTTATCCGAAGAAGAAATAGCTGGCTTGAAGGAAATGTTCAAGATGATAGATACAGACAACAGTGGTCAAATAACTTTTGAAGAACTTAAAGCTGGCTTGAAAAGAGTTGGTGCTAATCTTAAGGAGTCTGAGATCTATGATTTAATGCAAGCAGCTGATGTAGATAACAGTGGAACAATTGATTATGGCGAGTTCATTGCTGCAACCTTGCATCTTAACAAGATTGAAAGAGAAGATCATTTATTTGCAGCCTTTTCATACTTCGATAAAGATGGAAGTGGTTATATTACCCAAGATGAACTTCAACAGGCTTGTGATGAGTTTGGCATTGAAGATGCCCGCTTGGAAGAGATAATCAAGGAAATTGATCAGGATAATGATGGGCGCATAGATTATAATGAGTTTGTGGCCATGATGCAGAATGGAAATCTTCCTATGGTTGGTAGAAAGGGCCTAGAACATAGCTTCAGCATTGGTTTCAGGGAGGCATTAAAACTATAA 1752 0.4218 MQFLNNSPGQLKSVSAAMWRSQSPDESVSNRESVKEEATNEPESPLPVQNKPPEQLTMAKPESKEKTKPETKSEVEKEPEQEKQEKNKHRKPASVKRVSSAGLRVDSVLQRETGSFKEFYSLGRKLGQGQFGTTFLCVEKATGHEFACKSIAKRKLVTDEDVEDVRREIQIMHHLSGHPNVISIKGAYEDAIAVYVVMELCAGGELFDRIIQRGHYTERKAADLIRTIVGVVEACHSLGVMHRDLKPENFLFVNQHEDALLKTIDFGLSVFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFSSDPWPAISESAKDLVRKMLVRDPRRRMTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAESLSEEEIAGLKEMFKMIDTDNSGQITFEELKAGLKRVGANLKESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKIEREDHLFAAFSYFDKDGSGYITQDELQQACDEFGIEDARLEEIIKEIDQDNDGRIDYNEFVAMMQNGNLPMVGRKGLEHSFSIGFREALKL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212928g00002 583 CDD STKc_CAMK 119 377 - -
Stsc212928g00002 583 Gene3D Phosphorylase Kinase; domain 1 122 205 - -
Stsc212928g00002 583 SUPERFAMILY Protein kinase-like (PK-like) 119 379 IPR011009 -
Stsc212928g00002 583 SMART efh_1 531 559 IPR002048 GO:0005509
Stsc212928g00002 583 SMART efh_1 497 525 IPR002048 GO:0005509
Stsc212928g00002 583 SMART efh_1 425 453 IPR002048 GO:0005509
Stsc212928g00002 583 SMART efh_1 461 489 IPR002048 GO:0005509
Stsc212928g00002 583 Gene3D - 403 562 - -
Stsc212928g00002 583 Pfam Protein kinase domain 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212928g00002 583 MobiDBLite consensus disorder prediction 1 28 - -
Stsc212928g00002 583 CDD EFh 426 485 IPR002048 GO:0005509
Stsc212928g00002 583 FunFam CDPK-related kinase 3 112 280 - -
Stsc212928g00002 583 FunFam Calcium-dependent protein kinase 1 386 560 - -
Stsc212928g00002 583 FunFam Calcium-dependent protein kinase 1 122 205 - -
Stsc212928g00002 583 ProSitePatterns Protein kinases ATP-binding region signature. 126 153 IPR017441 GO:0005524
Stsc212928g00002 583 Pfam EF-hand domain pair 426 486 IPR002048 GO:0005509
Stsc212928g00002 583 Pfam EF-hand domain pair 496 557 IPR002048 GO:0005509
Stsc212928g00002 583 MobiDBLite consensus disorder prediction 1 99 - -
Stsc212928g00002 583 PANTHER SERINE/THREONINE-PROTEIN KINASE 111 552 - -
Stsc212928g00002 583 ProSiteProfiles Protein kinase domain profile. 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212928g00002 583 MobiDBLite consensus disorder prediction 58 89 - -
Stsc212928g00002 583 CDD EFh 497 557 IPR002048 GO:0005509
Stsc212928g00002 583 SMART serkin_6 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212928g00002 583 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Stsc212928g00002 583 ProSiteProfiles EF-hand calcium-binding domain profile. 493 526 IPR002048 GO:0005509
Stsc212928g00002 583 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Stsc212928g00002 583 ProSiteProfiles EF-hand calcium-binding domain profile. 527 562 IPR002048 GO:0005509
Stsc212928g00002 583 FunFam Calcium-dependent protein kinase SK5 288 383 - -
Stsc212928g00002 583 ProSitePatterns EF-hand calcium-binding domain. 540 552 IPR018247 -
Stsc212928g00002 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Stsc212928g00002 583 SUPERFAMILY EF-hand 418 557 IPR011992 -
Stsc212928g00002 583 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Stsc212928g00002 583 Gene3D Transferase(Phosphotransferase) domain 1 206 402 - -
Stsc212928g00002 583 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212928g00002 Stsc-Chr212928 2294 8843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212928g00002 9 578 EF-hand Containing Proteins AT5G04870 77.500 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc212928g00002 Pkinase 5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212928g00002 K13412 - gmx:100797449 1004.59