Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212927g00003 ATGGATATCAACAAACTACTAGTACAGGGAGCTAATAATGAAGAGTTGCTGTTTGAGGCTCAGACCCATTTGCACTACTACACTTTTCATTTCCTTGGTTCTTTGTGCCTCAAAGCTGCTATCCAATTGGGAATACCAGACATAATCCATAACCATGGCAACCCTATTACTATACCTGAGCTAGCATTGGCACTTAACATTGACTCTAACAAATCTTCTTATTTATACAGGCTCATGCGCTTCTTGGTTCATGCTGGATTCTTTGTTACAACCAAGATTGATGGTGGAAAAGAAGAAGAAGGAATAATGGGGTATGATCTTACACCCTCCTCAAGGCTCCTCCTCAAGAACAATGTCCCAACACTCTCTCCTTTTGTTCAAGCAATGTTAAATCATTCTATACTTCACTCTCCTGAGTTCTTAGCAGAATGGTTCCACAGCAGCAGTGACCTCACTCCATTCCACACTGCACATGGCATGAGTTTTTGGGACTATACGAGCCAAAACAAAGAGTTTAATGGCCTCTTCAGTGAAGCAATGATTAGTGATTCAGGGATGGCGAAGTTGGTTATCAAAGATTTCAAGTCTGTTTTTGAAGGACTGAAATCCATGGTTGATGTTGGAGGAGGCAAAGGAGGTATGGCTAGGTTGATATCTGAGTCAGTGCCTGGCTTGCAATGCACGGTTCTTGATCTTCCACATGTGGTTCAAAACTTGCAAGATACCAACAACCTGAAATTTGTTGGTGGTGACATGTTTGAAGCTATTCCTCCTGCTGATGCCATTCTTCTTAAGCTAGTCTTGCATTGTCTGAATGATGAAGACTGCGGCAAGGTACTGAAGAAGTGCAGAGAAGCCATTTCAAGCAAGGGCAAGGAAGGAAAAGTGATAATCATAGACATAGTGATCAATGAGAAGGATGATAAGCATGAATTGGCAGAAGCGAAGCTATATTTTGACATGTTAATGATGACTTTGCTCCCTGGAAGGGAGAGGGAAGAGAAAGAATGGGAGAAACTCTTCTTGGAAGCTGGATTCAGTCACTATAAGATTACACCCATATTTGGGACGAGATCACTCATTCAAGTTTATCCTTGA 1098 0.4171 MDINKLLVQGANNEELLFEAQTHLHYYTFHFLGSLCLKAAIQLGIPDIIHNHGNPITIPELALALNIDSNKSSYLYRLMRFLVHAGFFVTTKIDGGKEEEGIMGYDLTPSSRLLLKNNVPTLSPFVQAMLNHSILHSPEFLAEWFHSSSDLTPFHTAHGMSFWDYTSQNKEFNGLFSEAMISDSGMAKLVIKDFKSVFEGLKSMVDVGGGKGGMARLISESVPGLQCTVLDLPHVVQNLQDTNNLKFVGGDMFEAIPPADAILLKLVLHCLNDEDCGKVLKKCREAISSKGKEGKVIIIDIVINEKDDKHELAEAKLYFDMLMMTLLPGREREEKEWEKLFLEAGFSHYKITPIFGTRSLIQVYP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212927g00003 365 Gene3D Vaccinia Virus protein VP39 116 365 IPR029063 -
Stsc212927g00003 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 365 IPR016461 GO:0008168
Stsc212927g00003 365 PIRSF O-mtase 3 365 IPR016461 GO:0008168
Stsc212927g00003 365 CDD AdoMet_MTases 205 303 - -
Stsc212927g00003 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 363 IPR029063 -
Stsc212927g00003 365 Gene3D - 8 114 IPR036388 -
Stsc212927g00003 365 FunFam O-methyltransferase ZRP4 116 365 - -
Stsc212927g00003 365 Pfam O-methyltransferase domain 141 347 IPR001077 GO:0008171
Stsc212927g00003 365 FunFam Coniferyl alcohol 9-O-methyltransferase 8 114 - -
Stsc212927g00003 365 SUPERFAMILY "Winged helix" DNA-binding domain 14 118 IPR036390 -
Stsc212927g00003 365 PANTHER O-METHYLTRANSFERASE 18 350 IPR016461 GO:0008168
Stsc212927g00003 365 Pfam Dimerisation domain 36 83 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212927g00003 Stsc-Chr212927 4508 6390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212927g00003 8 351 Monolignol Biosynthesis Gene Families AT5G54160 30.312 9.35e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212927g00003 K22588 - qsa:O6P43_012698 471.47