Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212927g00002 ATGGAGATGAAGCAAGTGCAGAGTGCTGAAGAGTTGTTTCAAGCTCAAGCTCATTTATACAGCTATACTTACCATTCCATTGGGTCTATGTGCCTTAAAAGTGCACTTCATTTGGGAATACCAGACGTTATCCACAACCATGGCCAACCCATTACACTTGATGAGTTGGTCTTGGCACTTCAAATTGACCCTAACAAATCTGGATATGTGTATAGGCTCATGCGGTTCCTGGTGCATTCTGGATTCTTTGTTACAACCAAGGTTGATGGTGGAAAAGAAGAAGAAGAAGAAATATTGGGGTATGATCTTACACCTTCCTCAAGGCTCCTCCTCAAAGATGCTGTCCCAACTCTCGCTCCTTATGTTCAAGCAATGTTTCATCCTGCTATACTTCACTCTCCTGAGTTCTTGGCAGAATGGTTCCACACAAATGAGCCTACACCCTTTCACACTGCACATGGCACAAGCTATTGGGGCTATTTAAGCCAAAACCAAGAGTTCAATGCCCTCTTCAATGAAGCAATGATCAGTGACTCTGGAATGATGAATTTGGTGATCAAAGACTGCAAGTCTGTTTTTGAGGGGTTGAATTCATTGGTTGATGTTGGCGGCGGAAAAGGCGCCATGGTTAGATTGCTTTCTGAGTCTCTGCCTCATTTGCAATGCGTAGTGCTTGATCTTCCACACGTGGTTGAAAACTTGCAAGATTCCAATAACTTGAAATTTGTTGGGGGTGACATGTTTGATTCAATTCCTTCAGCTGATGCCACTCTTCTTAAGTTAGTTTTGCATGCTTATAGTGATGAAGATTGTGTCAAGGTACTGAAGAAGTGTAGAGAAGCTATTTCAGGGAAAGGTAAGGAAGGGAAAGTAATAATCATAGACATAGTGATCAATGAGAAGAATGNNNNNNNNNNGAAGCTGCTGTTGGATCTGTTAATGATGAGTCTGGTTCCTGGAAAAGAGAGGGAAGAAAAAGAATGGGAGAAGCTCTTCTTGGAAGCTGGATTCAGTCACTATAAGATTACACCCATCTTTGGCATGAGGTCTCTTATTGAAATTTTTCCTTAG 1071 0.4155 MEMKQVQSAEELFQAQAHLYSYTYHSIGSMCLKSALHLGIPDVIHNHGQPITLDELVLALQIDPNKSGYVYRLMRFLVHSGFFVTTKVDGGKEEEEEILGYDLTPSSRLLLKDAVPTLAPYVQAMFHPAILHSPEFLAEWFHTNEPTPFHTAHGTSYWGYLSQNQEFNALFNEAMISDSGMMNLVIKDCKSVFEGLNSLVDVGGGKGAMVRLLSESLPHLQCVVLDLPHVVENLQDSNNLKFVGGDMFDSIPSADATLLKLVLHAYSDEDCVKVLKKCREAISGKGKEGKVIIIDIVINEKNXXXXKLLLDLLMMSLVPGKEREEKEWEKLFLEAGFSHYKITPIFGMRSLIEIFP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212927g00002 356 FunFam O-methyltransferase ZRP4 112 356 - -
Stsc212927g00002 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Stsc212927g00002 356 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Stsc212927g00002 356 PANTHER O-METHYLTRANSFERASE 11 341 IPR016461 GO:0008168
Stsc212927g00002 356 SUPERFAMILY "Winged helix" DNA-binding domain 9 113 IPR036390 -
Stsc212927g00002 356 FunFam Coniferyl alcohol 9-O-methyltransferase 2 110 - -
Stsc212927g00002 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 353 IPR029063 -
Stsc212927g00002 356 Gene3D Vaccinia Virus protein VP39 112 356 IPR029063 -
Stsc212927g00002 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
Stsc212927g00002 356 Gene3D - 2 110 IPR036388 -
Stsc212927g00002 356 Pfam O-methyltransferase domain 137 338 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212927g00002 Stsc-Chr212927 2046 3690 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212927g00002 26 355 Monolignol Biosynthesis Gene Families AT5G54160 31.871 7.31e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212927g00002 K22588 - qsa:O6P43_012698 440.654