Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212910g00001 ATGGCAACTACCGATGAGAAAGATAATAATGAGCAAATGAGTTTGGGTTTGAGTCTCAGCTTAGGATTATATGCAGATAATAATAATAACAACAAGAATAAGAATGAGCAACAGCAAGCTTTGAAGCTCAATCTCATCCAGAAGCCTCCTCCTCAACCATTTCCAAACCATAGGCTTTCCTTCAACACCTTGTTTCCTTTTCATGATCTGAGTTCCGAGACGAGGTCCTTCCTTCGCGGAATAGACGTCAATTCGGCTCCGACGTCTACAGCGGCAGTGACGGCATGCGAAGACGAGAACGGCGTCTCATCACCAAATAGCACCGTGTCGAGCATCAGCGGTAAGCGGAGCGAACCTAACGGAAACGACGAGAACGAAGCGGCTGAGAGGGCGTCATATTCTCGCGGGAGCGACGAAGAAGACGGCGGCGGAATCGGCGGCGATGCCGACGGGGAGAGTTCAAGAAAGAAGCTGCGATTGTCTAAGGAACAGGCGGTGGTTCTGGAAGAGACCTTCAAGGAGTTCAACACTCTCAACCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAGGCCTAGACAGGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACGGAAGTTGATTGTGAATACTTGAAGAGATGTTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTCAGAGCATTGAAGTTATCACCACAGCTTTACATGCACATGAACCCTCCCACCACCCTTACAATGTGCCCTTCATGTGAGCGAGTAGCCGTTTCATCCACCGGATCCTCCTCCTCGTCGGCCACCATGCAATCTGCCCCTGCTTCGGCTAGTCAAAACCCTAACGTTCAGCGACCGATTCCCGTCAATCCATGGGGAGCAATGTCGATCCAACGCCGGCCGATTGACGGCCCGACTACCCGGCCATAA 969 0.5015 MATTDEKDNNEQMSLGLSLSLGLYADNNNNNKNKNEQQQALKLNLIQKPPPQPFPNHRLSFNTLFPFHDLSSETRSFLRGIDVNSAPTSTAAVTACEDENGVSSPNSTVSSISGKRSEPNGNDENEAAERASYSRGSDEEDGGGIGGDADGESSRKKLRLSKEQAVVLEETFKEFNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTGSSSSSATMQSAPASASQNPNVQRPIPVNPWGAMSIQRRPIDGPTTRP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212910g00001 322 MobiDBLite consensus disorder prediction 94 118 - -
Stsc212910g00001 322 SUPERFAMILY Homeodomain-like 141 212 IPR009057 -
Stsc212910g00001 322 Pfam HD-ZIP protein N terminus 13 119 IPR006712 GO:0005634
Stsc212910g00001 322 FunFam Homeobox-leucine zipper protein 18 143 216 - -
Stsc212910g00001 322 SMART halz 211 254 IPR003106 GO:0006355|GO:0043565
Stsc212910g00001 322 MobiDBLite consensus disorder prediction 94 157 - -
Stsc212910g00001 322 ProSitePatterns 'Homeobox' domain signature. 186 209 IPR017970 GO:0000981|GO:0006355
Stsc212910g00001 322 MobiDBLite consensus disorder prediction 271 299 - -
Stsc212910g00001 322 MobiDBLite consensus disorder prediction 119 137 - -
Stsc212910g00001 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 15 288 - -
Stsc212910g00001 322 Pfam Homeodomain 155 209 IPR001356 GO:0003677
Stsc212910g00001 322 Gene3D - 159 209 - -
Stsc212910g00001 322 Coils Coil 217 247 - -
Stsc212910g00001 322 SMART HOX_1 153 215 IPR001356 GO:0003677
Stsc212910g00001 322 CDD homeodomain 155 212 IPR001356 GO:0003677
Stsc212910g00001 322 MobiDBLite consensus disorder prediction 271 322 - -
Stsc212910g00001 322 Pfam Homeobox associated leucine zipper 211 245 IPR003106 GO:0006355|GO:0043565
Stsc212910g00001 322 ProSiteProfiles 'Homeobox' domain profile. 151 211 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212910g00001 Stsc-Chr212910 3453 7331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212910g00001 51 317 Homeobox Transcription Factor Family AT3G60390 62.633 2.16e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc212910g00001 HD-ZIP_N 3e-27 No_clan