Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212907g00002 ATGGAAAACCAATTCTTTCTGAACGGTGGTGGCATGTCCCATCATCATCATCATCAACATCCAATTCAGTTTGAAACATGGCATCATCATAATCCCAATCCACTCTCCTCATCACCATCATCCATGGAAATTCAGCAACAAAACCTTGTAAATTGCTCACCTGAGAATAACAATAACCACCAAAACCACGATTCCTTCTTCAACAACAACACTGATCATAACAACCTTCAATTCGACTCCTCTGCTCTGAGCTCAATGGTTTCATCTCCCTCAACAGCAACAGCAGCAGCACCACCTTCAAATTTCAACATGATCCAAAACGACAACAGTTTCGTCATACGAGAACTCATAGGCAAATTAGGAACAATTGGAGGAAGCTCCGGTGAGATCTCGCCACATTCTCAAACCGTCGCCCTTTACAACAGCAACACTCCTTCGTCGTCGTGTTACAGCACGCCGTTGAACTCTCCTCCCAAACTCAACATGCCGAAACCGCCGCCGCCGTCGTCGTCAATGGCTCTGAACTCAGCCACCGTCGCTGAATTCTCAGCTGACCCTGGCTTCGCCGAAAGAGCCGCGAAGTTCTCTTGCTTCGGAAGCAGAAGCTTCAACGGAAGAACAGCCACAACCACCACTACTACTGCTCCTAATTCTCCATTAATCATGATAAACAATAACAACAATGGCGCCGAGTTGACTCACCAGAGATCTAATCATCCAATTCACAGAGTATCGAGTAGTCCATCGCTGAAATCACTTGGATCTCAAATGGAGAACAACAAGAACCACATGAATAACAAGATTTGTTCAACGGAAGTGGCTGCTGCGAATTCTTCACAAGAGGAGTCAACAATTTCAGAGCAGAATCCAAATGTGGAAGGTGCTGCTGCTGCTTTGAAAATAGCTTCTTCTTCTGACATGACTTCAAGGAAGAGGAAAGGCTCTTCCAGAGGAAAACCCAAAGAAAACCCAACCTCTACCACCACCACCACCAAGGGTGGTGAAGGCAGTGAAGAGTCAAATGCAAAGAAGAGTAAGGGAAATGAAGGTGAAGGAAATGAGAATAACGGGAGAGTGAAGGTAGAAGAAGAATCGAAAGGTGGTGGGAACAGCAATGGTGGAGATGAGAAACAACAAAACAAGAGCAACAACTCAAAGCCTCCTGAGCCTCCAAAGGACTACATTCATGTCAGAGCAAGAAGAGGCCAGGCCACTGACAGCCATAGTCTTGCAGAACGTGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTTTGCAAGATCTTGTACCAGGTTGCAATAAGGTGACTGGTAAAGCCCTTATGCTTGATGAGATCATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTCCTGTCTATGAAATTGGCTTCTGTTAACACAAGAATGGATCTTAGCATTGAGAGCATTGTTCCAAAAGATATATTTCAATCAAATCATTCATCAATGGCACACCCAATTTTCCCAATAGAATCGTCAGCAGCACCCTTTTATGGCCACCACCAATCCCAGCAAAACCCAGTTATCCACAATAACATTCCTAATGGCACTGTGTCCCACAATTCAGTGGACCCTTTAGATTCTGCTTTGTGCCAAACTCTTGGCATGCAATTACCTCAACTTAATGCCTTCAATGAAATTGGATCTCAGTATCCATTAACTTTCTCTGAGGATGACCTTCACACCATTGTTCAAATGGGATTTGGCCAAACTTCAAACAGGACAACACCAATTCATTCCCCAAGTTTCGATGGTTCAAATCAAGTATCACAAATGAAAGTTGAGCTCTAA 1815 0.4419 MENQFFLNGGGMSHHHHHQHPIQFETWHHHNPNPLSSSPSSMEIQQQNLVNCSPENNNNHQNHDSFFNNNTDHNNLQFDSSALSSMVSSPSTATAAAPPSNFNMIQNDNSFVIRELIGKLGTIGGSSGEISPHSQTVALYNSNTPSSSCYSTPLNSPPKLNMPKPPPPSSSMALNSATVAEFSADPGFAERAAKFSCFGSRSFNGRTATTTTTTAPNSPLIMINNNNNGAELTHQRSNHPIHRVSSSPSLKSLGSQMENNKNHMNNKICSTEVAAANSSQEESTISEQNPNVEGAAAALKIASSSDMTSRKRKGSSRGKPKENPTSTTTTTKGGEGSEESNAKKSKGNEGEGNENNGRVKVEEESKGGGNSNGGDEKQQNKSNNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESIVPKDIFQSNHSSMAHPIFPIESSAAPFYGHHQSQQNPVIHNNIPNGTVSHNSVDPLDSALCQTLGMQLPQLNAFNEIGSQYPLTFSEDDLHTIVQMGFGQTSNRTTPIHSPSFDGSNQVSQMKVEL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212907g00002 604 Gene3D - 400 475 IPR036638 GO:0046983
Stsc212907g00002 604 MobiDBLite consensus disorder prediction 371 387 - -
Stsc212907g00002 604 Coils Coil 450 470 - -
Stsc212907g00002 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 403 453 IPR011598 GO:0046983
Stsc212907g00002 604 MobiDBLite consensus disorder prediction 320 336 - -
Stsc212907g00002 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 401 472 IPR036638 GO:0046983
Stsc212907g00002 604 CDD bHLH_AtBPE_like 393 478 - -
Stsc212907g00002 604 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 279 514 IPR024097 GO:0006355
Stsc212907g00002 604 FunFam Basic helix-loop-helix transcription factor 400 472 - -
Stsc212907g00002 604 MobiDBLite consensus disorder prediction 300 394 - -
Stsc212907g00002 604 MobiDBLite consensus disorder prediction 337 365 - -
Stsc212907g00002 604 SMART finulus 409 459 IPR011598 GO:0046983
Stsc212907g00002 604 Pfam Helix-loop-helix DNA-binding domain 407 454 IPR011598 GO:0046983
Stsc212907g00002 604 MobiDBLite consensus disorder prediction 240 262 - -
Stsc212907g00002 604 MobiDBLite consensus disorder prediction 147 173 - -
Stsc212907g00002 604 MobiDBLite consensus disorder prediction 579 604 - -
Stsc212907g00002 604 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212907g00002 Stsc-Chr212907 6759 10477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212907g00002 1 565 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 39.685 6.66e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212907g00002 HLH 4.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212907g00002 - - gmx:100812081 543.502