Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212899g00003 ATGCTTCTATGTGAGGTTCTTACACAGGCGGACAATAACTCCTCCATTGAAGCAGCAGCATCATCTTCAACTCATCATAACGAAGAGGTGGACTCAACAATGATGGTGGCGGTGCAGCCACAACCCCAAGTAGTAGAAGAGGAGGTGGTTTCTTACAGAGGGGTTCGAAGGCGGCCATGGGGAAAGTATGCAGCAGAGATAAGAGACTCTACTCGGAATGGTGAGAGGGTGTGGTTGGGAACATTCGAGACGGCGGAGGAAGCTGCTATGGCATACGACCAAGCGGCATTGGCAAGTAGAGGCTCAATGGCGGTGCTGAACTTCCCTGCAGAGATTGTTGTTGAGTCGCTACAGAAGATGATGGTGCAGTGTGGTGGCTTCACTCAAGGTTGTTCTCCCGTGTTGGAGCTGAAGAAGATGCATTCCATGAAGAGGAAGATGGACAACTGGAACAAGAAACTCATCTCCATTAACAACAACGATAATAATAATAATGTGATGGTATTCGAGGATTTGGGTGCTGAATATTTGGAACAACTTCTTACTTTGTCGTCCCATGACAATGCTTGCTAA 573 0.4747 MLLCEVLTQADNNSSIEAAASSSTHHNEEVDSTMMVAVQPQPQVVEEEVVSYRGVRRRPWGKYAAEIRDSTRNGERVWLGTFETAEEAAMAYDQAALASRGSMAVLNFPAEIVVESLQKMMVQCGGFTQGCSPVLELKKMHSMKRKMDNWNKKLISINNNDNNNNVMVFEDLGAEYLEQLLTLSSHDNAC 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212899g00003 190 Gene3D AP2/ERF domain 51 112 IPR036955 GO:0003700|GO:0006355
Stsc212899g00003 190 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Stsc212899g00003 190 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Stsc212899g00003 190 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Stsc212899g00003 190 ProSiteProfiles AP2/ERF domain profile. 51 109 IPR001471 GO:0003700|GO:0006355
Stsc212899g00003 190 FunFam Ethylene-responsive transcription factor 2 50 111 - -
Stsc212899g00003 190 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Stsc212899g00003 190 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Stsc212899g00003 190 Coils Coil 140 160 - -
Stsc212899g00003 190 PANTHER DNA-BINDING DOMAIN 27 182 IPR044808 GO:0003700|GO:0009873
Stsc212899g00003 190 SMART rav1_2 51 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212899g00003 Stsc-Chr212899 11168 11740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212899g00003 51 181 AP2-EREBP Transcription Factor Family AT3G23240 62.121 8.96e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc212899g00003 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212899g00003 K14516 - gmx:100787732 177.178