Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212899g00002 ATGTCGAATCCGAAGGTTTTCTTTGATATTGCAATTGGAAGGATGAAAGCAGGAAGGATAGTGATGGAGTTATTTGCTGATGTAACTCCAAAAACAGCTGAGAACTTCAGGGCTCTATGCACTGGAGAGAAGGGGATTGGAAAATCTGGGAAGCCTCTGCACTACAAAGGATCTGCATTTCACAGGATTATTCCTCAGTTTATGTGTCAGGGTGGAGATTTTACTAGAGGGAATGGGACTGGGGGAGAGTCGATTTACGGTTCGAAATTTGCTGATGAGAATTTCAAGTTGAAGCATACAGGACCTGGTATTCTTTCCATGGCGAATGCAGGGCCACATACAAATGGGTCTCAGTTTTTTATATGTACTGCTAAGACTGAGTGGCTTGATGGAAAGCATGTTGTGTTTGGAAAAGTTGTTGATGGCTACAGTGTGGTTCAAGAGATGGAGAAGGTTGGTTCAAATGCTGGGAAGACATCTGAACCAGTTGTCATACAAGATTGTGGTCAGATACCACAAAATTGA 525 0.4267 MSNPKVFFDIAIGRMKAGRIVMELFADVTPKTAENFRALCTGEKGIGKSGKPLHYKGSAFHRIIPQFMCQGGDFTRGNGTGGESIYGSKFADENFKLKHTGPGILSMANAGPHTNGSQFFICTAKTEWLDGKHVVFGKVVDGYSVVQEMEKVGSNAGKTSEPVVIQDCGQIPQN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212899g00002 174 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
Stsc212899g00002 174 Gene3D - 1 174 IPR029000 -
Stsc212899g00002 174 CDD cyclophilin_ABH_like 4 169 - -
Stsc212899g00002 174 PIRSF Peptidylpro_ismrse 1 174 IPR024936 GO:0003755
Stsc212899g00002 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Stsc212899g00002 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Stsc212899g00002 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Stsc212899g00002 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Stsc212899g00002 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Stsc212899g00002 174 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9 169 IPR002130 GO:0000413|GO:0003755
Stsc212899g00002 174 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Stsc212899g00002 174 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Stsc212899g00002 174 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Stsc212899g00002 174 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212899g00002 Stsc-Chr212899 7359 8709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212899g00002 18 152 U-box Gene Family AT5G67530 50.735 1.25e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212899g00002 K01802 - twl:120009664 321.627