Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212899g00001 ATGGCGAATCGCTGGTGGACCGATCCGGTGGGTCTAGCCGGAGTAGACAACAACTCTGCCATGAAGAAACCCGATCTGGGATTCTCCATCAACAACCAACCTGCATCTGCTGCTCCCATCAACAACCAAGAACAAGACGATAACAACAGCGAGGACCCCAAGGAAGGAGCAATCGAGCTCTCCGCCACGCGCCGCCCTAGGGGTCGTCCTCCCGGCTCCAAGAACAAGCCTAAACCACCGATATTCGTCACCAGAGACACCCCTAACGCTCTCCGAAGCCACGTCATGGAAGTTGCTAACGGAGCTGACATCACGGATAGCTTGCTTCAGTTCGCCAGGAAGCGCCAGAGAGGCGTCTGCGTCCTCAGCGCCACCGGAACCGTCGCTAACGTCACTCTCCGCCAGCCAACTGCTCCCGGCGCCGTCATGGCACTCCATGGCCGATTCGAGATCATATCTTTAACAGGCTCGTTCCTTCCCGGGCCTTCGCCGGCGGGGTCGTCGGGGCTGACGGTGTACCTGGCTGGAGGGCAGGGGCAGGTGGTGGGCGGTGGAGTGGTGGGGCCTCTTGTGGCGTCGGGATCAGTTATGATAATGGCGGCTACGTTTTCGAATGCAGTTTATGAGAGATTGCCGATTGAGAATGATGAGGATCAAGTTCAAGAAGGAGGAGGGGAGCAGGGTCAGGGTCAAGTGGGTCCTGGTGGCAACGACGGTGGGTCTCCGGCGGGGTTAGGTGGCTCCGGTGGAGAGGGTTATATGGTTGGTCAGCTGAGTCATGAAGGTAGTTCTTGGGGTCATGCAAGGGCACCACCCTTTTAA 822 0.5827 MANRWWTDPVGLAGVDNNSAMKKPDLGFSINNQPASAAPINNQEQDDNNSEDPKEGAIELSATRRPRGRPPGSKNKPKPPIFVTRDTPNALRSHVMEVANGADITDSLLQFARKRQRGVCVLSATGTVANVTLRQPTAPGAVMALHGRFEIISLTGSFLPGPSPAGSSGLTVYLAGGQGQVVGGGVVGPLVASGSVMIMAATFSNAVYERLPIENDEDQVQEGGGEQGQGQVGPGGNDGGSPAGLGGSGGEGYMVGQLSHEGSSWGHARAPPF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212899g00001 273 MobiDBLite consensus disorder prediction 1 85 - -
Stsc212899g00001 273 MobiDBLite consensus disorder prediction 47 62 - -
Stsc212899g00001 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 241 IPR014476 GO:0003680
Stsc212899g00001 273 Gene3D - 91 221 - -
Stsc212899g00001 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 216 - -
Stsc212899g00001 273 MobiDBLite consensus disorder prediction 24 46 - -
Stsc212899g00001 273 MobiDBLite consensus disorder prediction 218 273 - -
Stsc212899g00001 273 FunFam AT-hook motif nuclear-localized protein 91 219 - -
Stsc212899g00001 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 205 IPR005175 -
Stsc212899g00001 273 CDD DUF296 92 175 IPR005175 -
Stsc212899g00001 273 ProSiteProfiles PPC domain profile profile. 88 226 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212899g00001 Stsc-Chr212899 2878 3699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212899g00001 1 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 55.184 1.45e-88 263