Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212895g00001 ATGGAAGCAAAAGGGGAAGTGAGAAGGCTTCACATAATTTACTTTCTTGGTAACATAGGTGGTCGTGCAGATCATCCTCATCTCATTCGTGTTCTTCATCTTGCTCGTAATGGTGTTTATCTCAGAGATGTTAAGAGGTGGCTTGGAGAATTGAGAGGAAAAGACATGCCAGAAGCATTTTCTTGGTCCTACAAGAGGAGGTACAAGAGTGGGTATGTGTGGCAGGATTTATTGGATGATGATCTCATAACTCCCATTTCTGACAATGAATACGTCCTCAAAGGATCACAAATCCATCCAACCCCATTTGAAAATTTTTCCATTGATGAAAAGAGCACCAATAGTCATGTACTTGCCGAGAAGAAATCTCCGCAAGTACATGTTACAGAGGAAAAACAGCAGCAACCATCTTTAATGGAAGAAGAATCTAGAACTAGTCGACGATACACGGATTCCAAAACAGATACTCCTACAAAAGTATCATCAGAGATCAGCCAGGACTCCCTGGTCTTTAGCTCGGAGAGGTCATCCGTGACGACGGACGGATACGAATCTTGCAAGGCAGAAGAAGAGAAGGAGAAGCCTTTGGTCGGAAGCACCAAAGAATGTTGTAGCAGTGAACAAAAACAACAGAAACTTGAGAATTCTGCATTGCCTTCTTTGTATCACAATCTTCTAAGTAAGAGTATTGGTAACAAAGAAGAACAGATCAAAACAGATACACCTGATTCTTCTTTTTCTACCTCCTCCTCCTCCTCGTCGCAATCCTCCTTTAGCAAGCTTAGGAGCAGTTCGAACAGAGTTTCGATGGCGTTGCGGAACTGGATTTCTTGTGGGACAGTGGACACAAATGATGCAGCTTTGATAAGGATGAGAGCTTCTCAGAAAATTGATTCATCAAATGAGTCTATGACTGATAACTTAGCAGAAAATAAAGCACAGATTTGTAAAGGAGACAAATTTGGAGGATCAGCCAGGTGTTTTAGGACATGGAATAATGACCCCCAACCAAACCAACATGGTGTCAGGAAAAGTTTTGATGCAGAGGAAACAAACAGAAGCAGGAAAAAGCTAGGTGACTTCATGAATCAAACTCGTCTCAAACCACTTCGTGAACCGATATGCTCGCAATGTGGGAAGCCATTCAAGCCAGAGAAAATGTACAAACACATGAAGTCTTGTAAAGGAATCAAAGCATTGGGAACATCCACCACTACAACTGACAAGACACAGCTTCATAGATCATCAACTTCTTCTGATCATACAACTTACCTTTTGGCTAATTAG 1287 0.4165 MEAKGEVRRLHIIYFLGNIGGRADHPHLIRVLHLARNGVYLRDVKRWLGELRGKDMPEAFSWSYKRRYKSGYVWQDLLDDDLITPISDNEYVLKGSQIHPTPFENFSIDEKSTNSHVLAEKKSPQVHVTEEKQQQPSLMEEESRTSRRYTDSKTDTPTKVSSEISQDSLVFSSERSSVTTDGYESCKAEEEKEKPLVGSTKECCSSEQKQQKLENSALPSLYHNLLSKSIGNKEEQIKTDTPDSSFSTSSSSSSQSSFSKLRSSSNRVSMALRNWISCGTVDTNDAALIRMRASQKIDSSNESMTDNLAENKAQICKGDKFGGSARCFRTWNNDPQPNQHGVRKSFDAEETNRSRKKLGDFMNQTRLKPLREPICSQCGKPFKPEKMYKHMKSCKGIKALGTSTTTTDKTQLHRSSTSSDHTTYLLAN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212895g00001 428 MobiDBLite consensus disorder prediction 330 352 - -
Stsc212895g00001 428 Pfam Protein SOSEKI, plant 12 265 IPR010369 -
Stsc212895g00001 428 MobiDBLite consensus disorder prediction 232 263 - -
Stsc212895g00001 428 MobiDBLite consensus disorder prediction 184 198 - -
Stsc212895g00001 428 MobiDBLite consensus disorder prediction 155 183 - -
Stsc212895g00001 428 MobiDBLite consensus disorder prediction 241 263 - -
Stsc212895g00001 428 MobiDBLite consensus disorder prediction 119 201 - -
Stsc212895g00001 428 MobiDBLite consensus disorder prediction 405 428 - -
Stsc212895g00001 428 MobiDBLite consensus disorder prediction 123 154 - -
Stsc212895g00001 428 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 4 411 IPR010369 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212895g00001 Stsc-Chr212895 10195 14175 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc212895g00001 DUF966 8.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212895g00001 - - ahf:112770241 539.265