Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212886g00001 ATGAACATGGAGGTGGGGATGGGGCGCGTGGTTTGGGACGACGACGATAAAGCAACGGTGGCGGCGGTTCTGGGAGCACGCGCTTTCGAATTCTTGGTGACAAACGCGGTATCCAATGAGAACCTCTTAGTGGCAGTTGGGAGCGACGAGACCCTACAGAACAAGCTTTCCGATCTGGTGGACCGTCCAAACCTCTCTAATTTCAGTTGGAACTACGCCATTTTTTGGCAGTTATCTCAGTCCAAATCCGGCGACTGGGTTCTCGGATGGGGAGACGGTTCCTGCAGGGAGCCCAACGATGCCGAAGAAGGCTTCGGAGGCGCTGTCAGGGGAGGGATTCTCAGTCTCCGCATCGACGACGAGATGCAGCAGAGGATGAGGAAGAGGGTTTTGCAGAAGCTACACACTACCTTCGGTGGCTCCGACGAGGACAATTACGCTTTTGGCCTCGATCGAGTGACCGACACTGAGATGTTCTTTCTTGCTTCCATGTACTTCTCGTTCCCTCGCGGCCATGGCGGTCCAGGTAAGTGCTTTGCGTCCGGGAAGCACCTCTGGCTCTCGGACGCCATGAAATCCAACTCTGATTACTGCGTGCGCTCTTTCTTGGCTAAAAACGCTGGCTTTCAAACTATTATTTTGGTTCCCACCGATTTGGGAGTCTTGGAGTTGGGTTCTGTGAGGGCTCTGCCCGAGAATTTTGAGCTCTTGCAGGCCATCAAATCCGTGTTTTCGTCCCAGGCAACCGCCGCCGCCTACCCGATGGCTAACAATAAGCCTCTTTTGCCATTGCCGGTTATGAGTGAAAAGAGGGATGAGAATTGTAAGGCTCTTTTTCCTGGTTTGGCAATCGGGGACCATACTCACCATAACAATAACAAGGTTGTTGAGGGAGTGCCAAAGGTTTTTGGAACCGCTGTGAATTCTGGTAGGTCCCATTTCAGGGAGAAGCTTGCTATTAGGAAGATGGAGGAGAGGCCTTGGGTAGCCCACCACCAACCCAATGGGAACTGTAATGCCAATGCCAATCCCATCAACTTTCCGAATGGTCCTCCTCGGAATGGTGGTATTCATCACGGGTCTGCTTGGGTTGGTGGAGCAGCAGCAGCAGCAGTAGGAGGGAATAATAATACTAGTAACTGTAATAATCATCATGCTCAAGGTGGGGTGAGGCAGGCTGCTGTTGGTGGCGCTGCTGAGATTTTTGCACCTAGGTCGTCCACAAGTAATGTGGCTGCCGAGTTGGCTAACGGTGGTGTGAGGCCGCAGGATTTTAGGATTAGCAGCTATCAACCCCAAAGGCAGGTGCAAATGCAGATTGATTTCTCCGGAGCCACTTCCAGACCTTCTGTGAGGCCTGTGGTTGCCGATTCGGAGCTTTCTGATGTTGAGGCCCCGTGCAAGGAGGAGCAGCCGAGCACGGCTGACGAGAGGAGGCCCAGGAAGCGGGGAAGGAAGCCTGCTAATGGTAGGGAGGAACCACTCAATCATGTGGAAGCGGAGAGGCAGAGGCGCGAGAAGCTCAACCAGAGGTTCTATGCGCTGCGGTCTGTGGTGCCCAATATATCCAAGATGGACAAGGCGTCGTTGCTTGGTGACGCCATTGCCTACATCAATGAGCTCCAAGCAAAGCTAAAGATCATGGAGTCCGAGAGGGATAGACATGGAGGGAGCACTTCTTATAGGGAGCCGGATGCAATGCAAAGAGCGGTGGAAACTCCCCGCTGTGGTGGAGATGCAGATGTGGATATTGAAGCAGCAGAGGATGAGGTTATTGTTAGGGTGAGTTGCCCTCTTGATGCTCATCCGGTTTCAAGAGTGATCCAAACATTCAAAGAGGCACAAATCAGTGTTATGGATTCAAAAATGGCAGCTGCAAATGACACCATATTTCACACCTTTGTAATTAAGTCCCAACAAGGATGTGAACAGCTCACAAAAGACATGTTGATTGCAGCACTCTCCTCTGAATCCAATTCTTTACAGCAATTGTCATCAGTTGGTGGGTAG 2010 0.5184 MNMEVGMGRVVWDDDDKATVAAVLGARAFEFLVTNAVSNENLLVAVGSDETLQNKLSDLVDRPNLSNFSWNYAIFWQLSQSKSGDWVLGWGDGSCREPNDAEEGFGGAVRGGILSLRIDDEMQQRMRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLSDAMKSNSDYCVRSFLAKNAGFQTIILVPTDLGVLELGSVRALPENFELLQAIKSVFSSQATAAAYPMANNKPLLPLPVMSEKRDENCKALFPGLAIGDHTHHNNNKVVEGVPKVFGTAVNSGRSHFREKLAIRKMEERPWVAHHQPNGNCNANANPINFPNGPPRNGGIHHGSAWVGGAAAAAVGGNNNTSNCNNHHAQGGVRQAAVGGAAEIFAPRSSTSNVAAELANGGVRPQDFRISSYQPQRQVQMQIDFSGATSRPSVRPVVADSELSDVEAPCKEEQPSTADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKIMESERDRHGGSTSYREPDAMQRAVETPRCGGDADVDIEAAEDEVIVRVSCPLDAHPVSRVIQTFKEAQISVMDSKMAAANDTIFHTFVIKSQQGCEQLTKDMLIAALSSESNSLQQLSSVGG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212886g00001 669 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 495 556 IPR036638 GO:0046983
Stsc212886g00001 669 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 244 IPR025610 -
Stsc212886g00001 669 Gene3D - 485 555 IPR036638 GO:0046983
Stsc212886g00001 669 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 492 541 IPR011598 GO:0046983
Stsc212886g00001 669 MobiDBLite consensus disorder prediction 551 576 - -
Stsc212886g00001 669 PANTHER MYC 29 653 IPR045084 GO:0003700|GO:0006355
Stsc212886g00001 669 SMART finulus 498 547 IPR011598 GO:0046983
Stsc212886g00001 669 CDD bHLH_AtAIB_like 489 554 - -
Stsc212886g00001 669 MobiDBLite consensus disorder prediction 443 503 - -
Stsc212886g00001 669 MobiDBLite consensus disorder prediction 462 503 - -
Stsc212886g00001 669 FunFam Transcription factor bHLH13 485 558 - -
Stsc212886g00001 669 Pfam Helix-loop-helix DNA-binding domain 496 542 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212886g00001 Stsc-Chr212886 9927 12962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212886g00001 5 668 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.774 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212886g00001 bHLH-MYC_N 6.3e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212886g00001 - - adu:107491937 1152.12