Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212880g00001 ATAATTTCAAGTTCTTGTATTCACGGGCCTGAAACAATTTTTGGTGCTTTCTTTTTGCTGCTAGATGTTGAGCCACAGTATTCAGGAGCAAGAATAGATGGGGATGTAGTTACTTTGGATTTTGTGAAGAAAATGATGGAGGACTTCAAGAATCAGAAGTGCTTACATAAACGGTATGCTTACCAGATTGTTTTACAAACTAGAGAGTTGTTGCAAGCCTTGCCTTCTCTCGTTGATATAAAAGTTCCTGATGGAAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGACCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGACGATAATCCATATCTATTCAATGGTGACTTTGTGGATAGAGGATCTTTCTCTTTGGAAGTCATCCTCACTCTGTTTGCGTTTAAATGCATGTCTCCATCAGCAATATACCTAGCTAGAGGGAATCATGAGAGTAAGAGCATGAACAAGATATATGGTTTTGAGGGCGAGGTGCGCTCAAAGTTGAGTGACACGTTTGTGGAACTATTTGCGGAAGTATTTTGCTATTTGCCTTTGGCTCATGTGATAAATTCGAAAGTTTTTGTCGTTCATGGGGGTCTTTTTAGTGTTGATGGGGTGAAACTCTCTGACATACGAGCCATTAATCGGTTTTGTGAGCCTCCCGAAGAAGGATTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGACGAGGCCCGAGCAAGCGTGGTGTAGGTCTTTCTTTCGGTGCAGATGTAACGAAGAGGTTTTTGCAAGAAAATAATTTAGATTTAGTTGTGCGATCCCATGAAGTAAAGGACGAGGGTTATGAAATTGAGCATGATGGTAAACTCATAACTGTTTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCTTTTATTCGATTTGAAGCTCCTGATTTAAAACCTAACATTGTCACATTCACAGCAGTGCCACATCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCCTCCGGATGTTCTCATAA 1050 0.4038 IISSSCIHGPETIFGAFFLLLDVEPQYSGARIDGDVVTLDFVKKMMEDFKNQKCLHKRYAYQIVLQTRELLQALPSLVDIKVPDGKHFTVCGDVHGQFYDLLNIFELNGLPSDDNPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSDTFVELFAEVFCYLPLAHVINSKVFVVHGGLFSVDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFTAVPHPDVKPMAYANNFLRMFS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212880g00001 349 SMART pp2a_7 55 331 IPR006186 GO:0016787
Stsc212880g00001 349 Pfam PPP5 TPR repeat region 21 79 IPR013235 -
Stsc212880g00001 349 PRINTS Serine/threonine phosphatase family signature 184 210 IPR006186 GO:0016787
Stsc212880g00001 349 PRINTS Serine/threonine phosphatase family signature 270 290 IPR006186 GO:0016787
Stsc212880g00001 349 PRINTS Serine/threonine phosphatase family signature 292 308 IPR006186 GO:0016787
Stsc212880g00001 349 PRINTS Serine/threonine phosphatase family signature 214 241 IPR006186 GO:0016787
Stsc212880g00001 349 PRINTS Serine/threonine phosphatase family signature 87 114 IPR006186 GO:0016787
Stsc212880g00001 349 PRINTS Serine/threonine phosphatase family signature 117 144 IPR006186 GO:0016787
Stsc212880g00001 349 PRINTS Serine/threonine phosphatase family signature 150 174 IPR006186 GO:0016787
Stsc212880g00001 349 Pfam Calcineurin-like phosphoesterase 87 281 IPR004843 GO:0016787
Stsc212880g00001 349 SUPERFAMILY Metallo-dependent phosphatases 36 343 IPR029052 -
Stsc212880g00001 349 Gene3D - 16 348 IPR029052 -
Stsc212880g00001 349 FunFam Serine/threonine-protein phosphatase 5 15 348 - -
Stsc212880g00001 349 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 22 342 - -
Stsc212880g00001 349 CDD MPP_PP5_C 27 342 IPR041753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212880g00001 Stsc-Chr212880 57 3318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212880g00001 33 276 Calmodulin-binding Proteins AT5G63870 32.526 1.59e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212880g00001 K04460 - qsu:112010997 645.966