Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212814g00001 ATGTTTAATAATTCTTCAGCATTATGCATTGTTCCTCGGCAGAGACGTAAACCTTCTTCTTCTTCAACGAAAGTGGAAAGAAAGATCACAGAGAGAAACAGGAGAGAGCTGTTCAAGAGCCTTCATTTCAAGCTCAACTCTCTTCTCCCTAACCATAACCCTAGGGACCCGTTACCGCGTGCTGAAAAAGTAGAAGATGCCATAAGGTACATCAAAAGCTTAGAGGAAAGGGTTAAGATAGCTAATGAGAAGAAAGAAAGCCTGTTAGGAATTTTAAGGAACAAGAGTAGTCATGAGACGCATGGCATAAGCCTAACAAAAACGCCAACTATTGAGATTCATGAATTGGGTTCGATGTTAGAGATAGTTCTTATGACTTCTGGCTTTGATAACCAATTCATCTTTAAGGAAATCATTCGCATATTGCATGAAGAGAACATTGAAGTCCTTAGTGCAAATTCTTCACTTGCTGGAGATGCAATGCTTCATGTTGAGCACGCAGAGACTCGGCAATTCTTTCAATTTGGAACATCAAAAGTAAGTGAGAGATTGAAAATTTTCGTGAACGGCCATTTTCAGGATCTTGAAGGGGACCATAATAACTTCCAGTTGCCAACTTTTAATTTTCCTCCTGGCTAG 639 0.3975 MFNNSSALCIVPRQRRKPSSSSTKVERKITERNRRELFKSLHFKLNSLLPNHNPRDPLPRAEKVEDAIRYIKSLEERVKIANEKKESLLGILRNKSSHETHGISLTKTPTIEIHELGSMLEIVLMTSGFDNQFIFKEIIRILHEENIEVLSANSSLAGDAMLHVEHAETRQFFQFGTSKVSERLKIFVNGHFQDLEGDHNNFQLPTFNFPPG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212814g00001 212 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 20 187 - -
Stsc212814g00001 212 Coils Coil 64 91 - -
Stsc212814g00001 212 SMART finulus 28 80 IPR011598 GO:0046983
Stsc212814g00001 212 Pfam Helix-loop-helix DNA-binding domain 25 75 IPR011598 GO:0046983
Stsc212814g00001 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 88 IPR036638 GO:0046983
Stsc212814g00001 212 Gene3D - 13 101 IPR036638 GO:0046983
Stsc212814g00001 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 74 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212814g00001 Stsc-Chr212814 3390 5910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212814g00001 17 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.106 1.47e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212814g00001 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212814g00001 - - gmx:100817883 197.208