Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212804g00003 ATGGATCATGTGATTGGTGGGAAGTTTAAACTTGGCAGGAAAATTGGGAGCGGGTCTTTTGGGGAGCTCTTTATATCTGTTAATATACAAACTGGAGAGGAGGTGGCTTGTAAGCTGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCGAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGTGTTGAGGGAGACTACAATGTCATGGTTATTGACCTCCTCGGTCCAAGTCTGGAAGATTTGTTTAATTATTGCAACCGTAAGTTCTCATTGAAGACAGTGTTAATGCTTGCTGATCAATTGATTAACAGAGTTGAATATATGCATTCAAGAGGTTTTCTTCACCGGGACATAAAGCCAGACAATTTTTTAATGGGTTTAGGTCGTAAAGCGAATCAGGTGTACATTATTGACTACGGCCTTGCGAAAAAGTATAGGGATCTTCAAACTCATAGACACATACCATACAGGGAAAACAAGAATCTTACTGGTACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCCCTCGGCTATGTCCTCATGTACTTCTTAAAGGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCAACAAAAAACAAAAATATGATAGAATCAGTGAGAAGAAAGTGTCAACTCCGATAGAGGTGCTCTGCAAATCATATCCTGCTGAGTTTGTATCATACTTCCATTACTGCCGTTCTTTGCGGTTTGAAGACAAGCCAGATTATTCATATCTAAAGAGACTTTTCCGTGATCTGTTTATTCGAGAAGGCCATCAATTTGACTATGTTTTTGACTGGACTGTATTGAAGTATCCACATGTTGGCGACAGCAGCTCTCGAGGGCGGAATGGCGCTGGCAAGGCAGCTATGAATGCTGGGCCAACTGCATATAAACCTGAAAAGATCTCAGTTGGAAGAGATAGCCGAGATAAATTCGCTGGTGCTGTTGATGTATACGACCGGAGGAATCAAATGGGTAGCCCTCGTGTTGATCACATGAGATACAGAAGTTCAGACGATGTAGCAATACACATGCACCCTGATGAATACCATGACCAATACAATACTCGATACGCCAGCACTTCGAGAAGGGCCATGGTCACATCAAATAAACATGCTTCCTCGGGCGACTATGGTTATGCTGGGATGACTCCGAGTAGGGGCTATGGTGGCATGACCCCGAGTAGAGGCTACGGTGGGATGACCCCGAGTAGGGGTCATGCTGGTAACCCTGGCATGACCCCGAGCAGCATGACCCCAAGCCGGGGATTTCCGGTTCATCCTGGCATGACCCCGAGCAGGGGCCATCCAACCACCACACATCGAATTCAACCTATTTATGAGACCAAACAAGCAACTTTTACTCGCAACGGATCTACAAGACGCCAGCGTGAGCGTGACGATACTCTCAGGAACTTCGAACACCTTAATATCAGAAAGTAA 1515 0.4548 MDHVIGGKFKLGRKIGSGSFGELFISVNIQTGEEVACKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLKGSLPWQGLKAGNKKQKYDRISEKKVSTPIEVLCKSYPAEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGHQFDYVFDWTVLKYPHVGDSSSRGRNGAGKAAMNAGPTAYKPEKISVGRDSRDKFAGAVDVYDRRNQMGSPRVDHMRYRSSDDVAIHMHPDEYHDQYNTRYASTSRRAMVTSNKHASSGDYGYAGMTPSRGYGGMTPSRGYGGMTPSRGHAGNPGMTPSSMTPSRGFPVHPGMTPSRGHPTTTHRIQPIYETKQATFTRNGSTRRQRERDDTLRNFEHLNIRK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212804g00003 504 CDD STKc_CK1_delta_epsilon 8 281 - -
Stsc212804g00003 504 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212804g00003 504 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212804g00003 504 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc212804g00003 504 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212804g00003 504 FunFam Putative Casein kinase I 1 85 - -
Stsc212804g00003 504 Gene3D Transferase(Phosphotransferase) domain 1 1 326 - -
Stsc212804g00003 504 FunFam Casein kinase 1-like protein 1 331 - -
Stsc212804g00003 504 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Stsc212804g00003 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc212804g00003 504 PANTHER CASEIN KINASE-RELATED 9 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212804g00003 Stsc-Chr212804 8295 13112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212804g00003 1 230 EF-hand Containing Proteins AT2G38910 26.506 1.37e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc212804g00003 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212804g00003 K08960 - gmx:100789031 714.531