Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212775g00004 ATGCAACCAAAAATGGGGAAAATGGATATAGACTATCAGCTTCTTCATGATGCATTTTTTAAATACCAAACAAAGCCAAAGCTGACATCTCTCGGGGACCTGTATCACGAAGGAAAAGAATTTGAGTATATTTTGAGTCTCACAAAGGCATTGGCATATTGTCATGAGAAGCATGTCATTCATAGGGATATCAAGCCGGAAAATTTGTTGCTTGACCATGAGCAAATAAATTTATGCAGTGGATAG 246 0.374 MQPKMGKMDIDYQLLHDAFFKYQTKPKLTSLGDLYHEGKEFEYILSLTKALAYCHEKHVIHRDIKPENLLLDHEQINLCSG 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212775g00004 81 PANTHER SPLICING FACTOR 3B 1 48 - -
Stsc212775g00004 81 Pfam Domain of unknown function (DUF382) 1 40 IPR007180 GO:0005634
Stsc212775g00004 81 Gene3D Transferase(Phosphotransferase) domain 1 12 80 - -
Stsc212775g00004 81 SUPERFAMILY Protein kinase-like (PK-like) 34 74 IPR011009 -
Stsc212775g00004 81 ProSitePatterns Serine/Threonine protein kinases active-site signature. 59 71 IPR008271 GO:0004672|GO:0006468
Stsc212775g00004 81 Pfam Protein kinase domain 37 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212775g00004 81 ProSiteProfiles Protein kinase domain profile. 1 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212775g00004 Stsc-Chr212775 11129 12336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212775g00004 27 72 CBL-interacting serine-threonine protein kinases AT1G30270 50.000 3.50e-08 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Stsc212775g00004 Pkinase 9.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212775g00004 K12829 - gmx:100815606 93.2041