Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212774g00002 ATGAAAGAGGAATCAATAGGACTGATCATTGGGATCTCCATAGGTGTAGTTATTGGAATTGTTCTTGCAATTTCTGCACTTTTCTGCTTTAGATGCCATAGGAAGCGTTCACAGATTGGGAACAGCAGTTCCAGGAGGGCAGCCACCATACCAATTCGCGCAAATGGTGCCGATTCGTGTACTATTCTCTCAGACTCAACCTTAGGTCCAGAATCACCTGTGAAGTCCGCTTCGCGAAACGGTGGCATGTCCTTCTGGCTTGATGGGTTTAAGAAGAGTAGCATGGTTTCAGCATCTGGTATACCAGAATATTCTTACAAGGATTTGCAGAAAGCAACCTATAATTTTACAACACTCATAGGACAAGGTGCCTTTGGTCCTGTTTATAAAGCGCAGATGTGTACAGGCGAAACTGTTGCGGTTAAAGTTCTTGCAACAAATTCCAAGCAAGGGGAAAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTGCATCACAGAAACCTGGTCAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTTTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTACATCGAAGAGAATGGGATGCTGGGTTGGGATTTGAGGGTTCAAATAGCTTTAGATGTAGCAAGAGGCTTGGAATATCTTCATGATGGAGCTGTTCCTCCTGTAATACATAGAGATATCAAGTCTAACAATATTCTCTTGGACCAGTCGATGCGAGCCAGGGTTGCTGATTTTGGTCTTTCAAGAGAAGAGGTGGTGGATAAACAGGCAGCCATCCGCGGAACCTTTGGATACCTTGACCCTGAGTATATATCTTCGGGGACATTCACTAAGAAGAGTGATGTTTATAGTTTCGGTGTGTTGCTCTTTGAACTCATAGCCGGAAGAAATCCACAGCAGGGTCTTATGGAATATGTTGAGCTTGTAAGACCTCTCTCTTGTTATAACATCATCTTAATTTCTAATAGGGAAAATGTGGTGTACTTTTTATGA 1029 0.4266 MKEESIGLIIGISIGVVIGIVLAISALFCFRCHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPESPVKSASRNGGMSFWLDGFKKSSMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMCTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYIEENGMLGWDLRVQIALDVARGLEYLHDGAVPPVIHRDIKSNNILLDQSMRARVADFGLSREEVVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELVRPLSCYNIILISNRENVVYFL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212774g00002 342 Pfam Protein tyrosine and serine/threonine kinase 116 316 IPR001245 GO:0004672|GO:0006468
Stsc212774g00002 342 PANTHER OS01G0750732 PROTEIN 4 311 - -
Stsc212774g00002 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Stsc212774g00002 342 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 88 189 - -
Stsc212774g00002 342 SMART serkin_6 114 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212774g00002 342 SUPERFAMILY Protein kinase-like (PK-like) 96 321 IPR011009 -
Stsc212774g00002 342 Gene3D Phosphorylase Kinase; domain 1 88 189 - -
Stsc212774g00002 342 Gene3D Transferase(Phosphotransferase) domain 1 190 334 - -
Stsc212774g00002 342 ProSiteProfiles Protein kinase domain profile. 114 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212774g00002 Stsc-Chr212774 9361 12656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212774g00002 58 324 Receptor kinase-like Gene Family AT3G19300 45.818 6.60e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Stsc212774g00002 PK_Tyr_Ser-Thr 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212774g00002 - - gmx:100799586 555.829