Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212774g00001 ATGAAAGAGGAATCAATAGGACTGATCATTGGGATCTCCATAGGTGTAGTTATTGGAATTGTTCTTGCAATTTCTGCACTTTTCTGCTTTAGATGCCATAGGAAGCGTTCACAGATTGGGAACAGCAGTTCCAGGAGGGCAGCCACCATACCAATTCGCGCAAATGGTGCCGATTCGTGTACTATTCTCTCAGACTCAACCTTAGGTCCAGAATCACCTGTGAAGTCCGCTTCGCGAAACGGTGGCATGTCCTTCTGGCTTGATGGGTTTAAGAAGAGTAGCATGGTTTCAGCATCTGGTATACCAGAATATTCTTACAAGGATTTGCAGAAAGCAACCTATAATTTTACAACACTCATAGGACAAGGTGCCTTTGGTCCTGTTTATAAAGCGCAGATGTGTACAGGCGAAACTGTTGCGGTTAAAGTTCTTGCAACAAATTCCAAGCAAGGGGAAAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTGCATCACAGAAACCTGGTCAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTTTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTACATCGAAGAGAATGGGATGCTGGGTTGGGATTTGAGGGTTCAAATAGCTTTAGATGTAGCAAGAGGCTTGGAATATCTTCATGATGGAGCTGTTCCTCCTGTAATACATAGAGATATCAAGTCTAACAATATTCTCTTGGACCAGTCGATGCGAGCCAGGGTTGCTGATTTTGGTCTTTCAAGAGAAGAGGTGGTGGATAAACAGGCAGCCATCCGCGGAACCTTTGGATACCTTGACCCTGAGTATATATCTTCGGGGACATTCACTAAGAAGAGTGATGTTTATAGTTTCGGTGTGTTGCTCTTTGAACTCATAGCCGGAAGAAATCCACAGCAGGGTCTTATGGAATATGTTGAGCTTGCCGCGATGAACACCGATGGAAAAGTTGGTTGGGAGGAGATTGTTGATTCTAGGCTAGAGGGTAAGTGTGACTTCCAAGAGCTCAATGAAGTCGCGGCCCTTGCCTACAAGTGCATCAACCGTACACCAAGGAAGCGGCCGTCGATGAGGGACATCGTGCAGGTGCTGACAAGGATCGTCAAGTCTCGGCACCATAGGAATCATCACCACCACAAAAAGTCCCTGTCAGCAACAGCAGATGAAGTTTCCATTGATGTTGATAATCAAGACACCAAGGTTACGAGTGTTTCTCAACACAAGAGAGAAGAGTCTGTAGATAGTGCAGCTGACATGTATGATGTGTAG 1305 0.449 MKEESIGLIIGISIGVVIGIVLAISALFCFRCHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPESPVKSASRNGGMSFWLDGFKKSSMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMCTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYIEENGMLGWDLRVQIALDVARGLEYLHDGAVPPVIHRDIKSNNILLDQSMRARVADFGLSREEVVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTDGKVGWEEIVDSRLEGKCDFQELNEVAALAYKCINRTPRKRPSMRDIVQVLTRIVKSRHHRNHHHHKKSLSATADEVSIDVDNQDTKVTSVSQHKREESVDSAADMYDV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212774g00001 434 MobiDBLite consensus disorder prediction 382 434 - -
Stsc212774g00001 434 ProSiteProfiles Protein kinase domain profile. 114 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212774g00001 434 FunFam calcium/calmodulin-regulated receptor-like kinase 1 190 400 - -
Stsc212774g00001 434 CDD STKc_IRAK 120 379 - -
Stsc212774g00001 434 MobiDBLite consensus disorder prediction 414 428 - -
Stsc212774g00001 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Stsc212774g00001 434 PANTHER OS01G0750732 PROTEIN 4 405 - -
Stsc212774g00001 434 SMART serkin_6 114 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212774g00001 434 Gene3D Transferase(Phosphotransferase) domain 1 190 405 - -
Stsc212774g00001 434 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 88 189 - -
Stsc212774g00001 434 Pfam Protein tyrosine and serine/threonine kinase 116 376 IPR001245 GO:0004672|GO:0006468
Stsc212774g00001 434 Gene3D Phosphorylase Kinase; domain 1 88 189 - -
Stsc212774g00001 434 SUPERFAMILY Protein kinase-like (PK-like) 103 393 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212774g00001 Stsc-Chr212774 9291 13305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212774g00001 24 428 Glycoside Hydrolase AT3G07070 36.792 2.73e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Stsc212774g00001 PK_Tyr_Ser-Thr 1.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212774g00001 - - gmx:100799586 736.487