Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212770g00002 ATGGGTTCTATATCCCAGACAAGATGCTTCAAGTTGACTTCATGTAATTCAAATGCCGAGACGCAAAACATGGGTGTGTATGGAATCATGCTCATTGCTGCTTTGAGTACATTGCTGCTTATCATTTACAGCTGTTCTGATCAAGTTCTCAGTACCAGAGAAAGGAGAATGGCGAAGTCCAGGGAAGCAGCAGCTAGAAGTGTAAGGAAGACTTCAAATGCTCAAAAAAGATGGAAGGCTGCAAAAGACGTCGCTAAAAAGAGTGCAAGTGGACTACAAGCTCAACTATCACGAACATTTTCACGGAAGAAGGATGTGGCAGATCCCGAAAAAGTTAAAATTTTGAGTCAAGAAACTCCAGAAGTTGATATACAATTGGTTTCACATTCGCGCCCTGTTACACCCAACATGGCTCCGAGCTCATCACCTGTGCATAAAGAAAAGGCTAGAGGATCCAGTGATCTGATGCAGATGATGCATGAAATTGAAAATGATCCAGATATTGATGATAACCATAATTTAGAAGTTAAGACTAGAGATAAAACTGTTAAGGGTAAAGCTTCTAAGGAAAAACAACCAGAAACTCATAGCCAGATTTTTAAGTATGCTTATGCTCAATTGGAGAAGGAGAAGGCACAGCAACAAGAAAACAAGGATCTTACTTTCTCAAGAGTAGTAAATATGGCTACCAAAAGTGAACAAAGGAAACGACCATTAATGGAAATTTCTTTCAAAGATCTAACTCTCATTTTGAAAGCGCAAAACAAAATTATATTGAGATGTGTAACAGGGAAAATTAAACCTGGGCGCATTACTGCTGTCATGGGTCCATCAGGGGCCGGTAAGACAACATTTCTTTCCGCAATAGCTGGGAAAGCATTTGGGTGTAAGATGACTGGTTCCGTTCTTATAAATGGAAAGGCCGAATCGATCCATTCCTATAAGAAAATTATTGGTTTTGTGCCACAAGATGATATAGTTCATGGAAATCTGACAGTAGAAGAGAATTTACGGTTCAGTGCACAGTGCAGGCTACCTGCTGGCTTGCCAAAACCAGACAAAGTTCTGGTTGTTGAAAGGGTTATTGAATTCTTAGGCCTTCAATCTGTGCGGAATTCTTTGGTTGGAACTGTAGAAAAACGAGGGATTTCCGGTGGCCAGAGGAAGCGTGTAAATGTCGGACTGGAGATGGTCATGGAACCTTCACTTTTAATGTTGGATGAACCCACATCTGGTTTGGACAGTGCATCATCCCAGCTACTTCTTAGAGCATTAAAGCAGGAAGCTCTTCAAGGAGTGAACATATGCATGGTGGTTCACCAACCAAGCTATGCATTGTTCAATATGTTTGATGACTTGATACTTCTGGCAAAAGGCGGTCTTACTGTGTATCATGGACCTGTCAAGAAAGTTGAAGAATACTTTGCAGGCCTTGGGATTAGTATTCCAGAGCGGATCAATCCTCCTGATTACTTTATCGACATTTTGGAGGGCATAGTAGAACCTGGTGGAAGCTCTGGAGTCAGTTATAAAGACCTGCCAGTTAGATGGATGCTTCACAATGGATACCCAGTACCTCTTGATATGCAGAAGTGTGCAGCAAAATTTGGTAACTTAACTCCAAATCCAGCTAAAGAAATAGATCCCGATGGCTTCGGACATGATGAAAGAAGCTTTGCCGGAGAACTATGGCATGATGTCAGACATGTTGTAGAATTGGAGGGGGAGAAGATACGGTTTAAATTTCTGAAATCCAAAGATTTATCTAACCGGGAAACTCCTGGTATATTCAAGCAATACAAGTACTTCCTTATACGGATTGGGAAGCAGCGACTAAGGGAATCTAAAATCCAAGCCATAGATTATCTAATATTATTACTTGCTGGAGCTTGCTTAGGAGCGCTGAGTAGAGGAAATGATCAGACGTTTGGTGGAGCTGGATACATCCATACGGTGATTGCTCTCTTTTATGTAAAATTGCGGCCTTGA 1989 0.4128 MGSISQTRCFKLTSCNSNAETQNMGVYGIMLIAALSTLLLIIYSCSDQVLSTRERRMAKSREAAARSVRKTSNAQKRWKAAKDVAKKSASGLQAQLSRTFSRKKDVADPEKVKILSQETPEVDIQLVSHSRPVTPNMAPSSSPVHKEKARGSSDLMQMMHEIENDPDIDDNHNLEVKTRDKTVKGKASKEKQPETHSQIFKYAYAQLEKEKAQQQENKDLTFSRVVNMATKSEQRKRPLMEISFKDLTLILKAQNKIILRCVTGKIKPGRITAVMGPSGAGKTTFLSAIAGKAFGCKMTGSVLINGKAESIHSYKKIIGFVPQDDIVHGNLTVEENLRFSAQCRLPAGLPKPDKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALKQEALQGVNICMVVHQPSYALFNMFDDLILLAKGGLTVYHGPVKKVEEYFAGLGISIPERINPPDYFIDILEGIVEPGGSSGVSYKDLPVRWMLHNGYPVPLDMQKCAAKFGNLTPNPAKEIDPDGFGHDERSFAGELWHDVRHVVELEGEKIRFKFLKSKDLSNRETPGIFKQYKYFLIRIGKQRLRESKIQAIDYLILLLAGACLGALSRGNDQTFGGAGYIHTVIALFYVKLRP 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212770g00002 662 Gene3D - 226 478 IPR027417 -
Stsc212770g00002 662 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 203 658 - -
Stsc212770g00002 662 Pfam ABC-2 type transporter 440 655 IPR043926 GO:0140359
Stsc212770g00002 662 FunFam ABC transporter G family member 24 236 478 - -
Stsc212770g00002 662 Pfam ABC transporter 261 411 IPR003439 GO:0005524
Stsc212770g00002 662 Coils Coil 204 224 - -
Stsc212770g00002 662 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 242 483 IPR003439 GO:0005524
Stsc212770g00002 662 SMART AAA_5 268 460 IPR003593 GO:0016887
Stsc212770g00002 662 CDD ABCG_EPDR 240 466 - -
Stsc212770g00002 662 ProSitePatterns ABC transporters family signature. 383 397 IPR017871 GO:0005524|GO:0016887
Stsc212770g00002 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 475 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212770g00002 Stsc-Chr212770 2612 10132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212770g00002 258 443 Calmodulin-binding Proteins AT2G36910 29.843 1.81e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212770g00002 - - gmx:100783798 1001.12