Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212770g00001 ATGTATTGCCCAACAACTACAAAAAGTGCTCCTTGCAGTAGTGGGCATTACTGTAGGATGGGTTCTATATCCCAGACAAGATGCTTCAAGTTGACTTCATGTAATTCAAATGCCGAGACGCAAAACATGGGTGTGTATGGAATCATGCTCATTGCTGCTTTGAGTACATTGCTGCTTATCATTTACAGCTGTTCTGATCAAGTTCTCAGTACCAGAGAAAGGAGAATGGCGAAGTCCAGGGAAGCAGCAGCTAGAAGTGTAAGGAAGACTTCAAATGCTCAAAAAAGATGGAAGGCTGCAAAAGACGTCGCTAAAAAGAGTGCAAGTGGACTACAAGCTCAACTATCACGAACATTTTCACGGAAGAAGGATGTGGCAGATCCCGAAAAAGTTAAAATTTTGAGTCAAGAAACTCCAGAAGTTGATATACAATTGGTTTCACATTCGCGCCCTGTTACACCCAACATGGCTCCGAGCTCATCACCTGTGCATAAAGAAAAGGCTAGAGGATCCAGTGATCTGATGCAGATGATGCATGAAATTGAAAATGATCCAGATATTGATGATAACCATAATTTAGAAGTTAAGACTAGAGATAAAACTGTTAAGGGTAAAGCTTCTAAGGAAAAACAACCAGAAACTCATAGCCAGATTTTTAAGTATGCTTATGCTCAATTGGAGAAGGAGAAGGCACAGCAACAAGAAAACAAGGATCTTACTTTCTCAAGAGTAGTAAATATGGCTACCAAAAGTGAACAAAGGAAACGACCATTAATGGAAATTTCTTTCAAAGATCTAACTCTCATTTTGAAAGCGCAAAACAAAATTATATTGAGATGTGTAACAGGGAAAATTAAACCTGGGCGCATTACTGCTGTCATGGGTCCATCAGGGGCCGGTAAGACAACATTTCTTTCCGCAATAGCTGGGAAAGCATTTGGGTGTAAGATGACTGGTTCCGTTCTTATAAATGGAAAGGCCGAATCGATCCATTCCTATAAGAAAATTATTGGTTTTGTGCCACAAGATGATATAGTTCATGGAAATCTGACAGTAGAAGAGAATTTACGGTTCAGTGCACAGTGCAGGCTACCTGCTGGCTTGCCAAAACCAGACAAAGTTCTGGTTGTTGAAAGGGTTATTGAATTCTTAGGCCTTCAATCTGTGCGGAATTCTTTGGTTGGAACTGTAGAAAAACGAGGGATTTCCGGTGGCCAGAGGAAGCGTGTAAATGTCGGACTGGAGATGGTCATGGAACCTTCACTTTTAATGTTGGATGAACCCACATCTGGTTTGGACAGTGCATCATCCCAGCTACTTCTTAGAGCATTAAAGCAGGAAGCTCTTCAAGGAGTGAACATATGCATGGTGGTTCACCAACCAAGCTATGCATTGTTCAATATGTTTGATGACTTGATACTTCTGGCAAAAGGCGGTCTTACTGTGTATCATGGACCTGTCAAGAAAGTTGAAGAATACTTTGCAGGCCTTGGGATTAGTATTCCAGAGCGGATCAATCCTCCTGATTACTTTATCGACATTTTGGAGGGCATAGTAGAACCTGGTGGAAGCTCTGGAGTCAGTTATAAAGACCTGCCAGTTAGATGGATGCTTCACAATGGATACCCAGTACCTCTTGATATGCAGAAGTGTGCAGCAAAATTTGGTAACTTAACTCCAAATCCAGCTAAAGAAATAGATCCCGATGGCTTCGGACATGATGAAAGAAGCTTTGCCGGAGAACTATGGCATGATGTCAGACATGTTGTAGAATTGGAGGGGGAGAAGATACGGTTTAAATTTCTGAAATCCAAAGATTTATCTAACCGGGAAACTCCTGGTATATTCAAGCAATACAAGTACTTCCTTATACGGATTGGGAAGCAGCGACTAAGGGAATCTAAAATCCAAGCCATAGATTATCTAATATTATTACTTGCTGGAGCTTGCTTAGGAGCGCTGAGTAGAGGAAATGATCAGACGTTTGGTGGAGCTGGATACATCCATACGGTGATTGCTGTATCTCTTTTATGTAAAATTGCGGCCTTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCCTATTTTCTTTCTAGAGACACAATAGATCATTTTAATACTGTGGTCAAGCCTGTGGTGTACCTCTCTATGTTCTATTTCTTCACCTATCCAAGATCAACTTTTGCCGATAATTACATTGTGCTGCTGTGTCTAGTATACTGTGTGACTGGAATAGCATATACATTGGCTATCGTATTCAAACCTAGTGCGGCACAGCTATGGTCTGTTCTTCTTCCGGTTGTTATGACCCTTGTTGCGACACAAACCAAAGACAGTACATTTTTGAAGAACGTATCGAAATTATGTTATCCTAAGTGGGCTTTAGAAGCATTCGTAATCGCAAATGCTGAAAGGTATCATGGAGTGTGGATCATAACTCGATGTGGTTCACTAATGAAAAGTGGCTATAATATTCATGATTGGGGTCTGTGCGTAACCATCCTAATTGTTATGGGAGTAATCGCTAGGGCAATAGCTTTTTCCTCTATGCTTATCTTTCAAAAGAAGTGA 2604 0.4098 MYCPTTTKSAPCSSGHYCRMGSISQTRCFKLTSCNSNAETQNMGVYGIMLIAALSTLLLIIYSCSDQVLSTRERRMAKSREAAARSVRKTSNAQKRWKAAKDVAKKSASGLQAQLSRTFSRKKDVADPEKVKILSQETPEVDIQLVSHSRPVTPNMAPSSSPVHKEKARGSSDLMQMMHEIENDPDIDDNHNLEVKTRDKTVKGKASKEKQPETHSQIFKYAYAQLEKEKAQQQENKDLTFSRVVNMATKSEQRKRPLMEISFKDLTLILKAQNKIILRCVTGKIKPGRITAVMGPSGAGKTTFLSAIAGKAFGCKMTGSVLINGKAESIHSYKKIIGFVPQDDIVHGNLTVEENLRFSAQCRLPAGLPKPDKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALKQEALQGVNICMVVHQPSYALFNMFDDLILLAKGGLTVYHGPVKKVEEYFAGLGISIPERINPPDYFIDILEGIVEPGGSSGVSYKDLPVRWMLHNGYPVPLDMQKCAAKFGNLTPNPAKEIDPDGFGHDERSFAGELWHDVRHVVELEGEKIRFKFLKSKDLSNRETPGIFKQYKYFLIRIGKQRLRESKIQAIDYLILLLAGACLGALSRGNDQTFGGAGYIHTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSRDTIDHFNTVVKPVVYLSMFYFFTYPRSTFADNYIVLLCLVYCVTGIAYTLAIVFKPSAAQLWSVLLPVVMTLVATQTKDSTFLKNVSKLCYPKWALEAFVIANAERYHGVWIITRCGSLMKSGYNIHDWGLCVTILIVMGVIARAIAFSSMLIFQKK 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212770g00001 867 Pfam ABC-2 type transporter 459 867 IPR043926 GO:0140359
Stsc212770g00001 867 Pfam ABC transporter 280 430 IPR003439 GO:0005524
Stsc212770g00001 867 ProSitePatterns ABC transporters family signature. 402 416 IPR017871 GO:0005524|GO:0016887
Stsc212770g00001 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 493 IPR027417 -
Stsc212770g00001 867 FunFam ABC transporter G family member 24 255 497 - -
Stsc212770g00001 867 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 198 854 - -
Stsc212770g00001 867 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 261 502 IPR003439 GO:0005524
Stsc212770g00001 867 SMART AAA_5 287 479 IPR003593 GO:0016887
Stsc212770g00001 867 CDD ABCG_EPDR 259 485 - -
Stsc212770g00001 867 Coils Coil 223 243 - -
Stsc212770g00001 867 Gene3D - 245 497 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212770g00001 Stsc-Chr212770 2363 10132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212770g00001 277 491 Calmodulin-binding Proteins AT2G36910 27.917 3.65e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212770g00001 - - gmx:100783798 1380.93