Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212762g00001 ATGCTGTGGAAAGGGTCAGTGAAGTACCACAGGATTGGACCATGGAGTGGCCTTGGATTTAGTGGAGCACCCTTATGGAGGGGCACTCAACTTATTCTTCAAAACATGATCAACACCACCAACCAAGTCTACTACTCCTACAACCTCATACAGGGCACTTCCATGATGATCACCATCACCCTTGTAAACCAAACCCTAAACCTTCGACAACAAATCGTATGGGTCCCACAAGACAAAACATGGAAGCCCTTCCTATCTTTCCCCCGAGATAATCCCTGCGATGTTTACAACACTTGTGGTCCATTCGGCTATTGCATTTCGAATCGATCACCCAATTGTGAGTGCTTGCAAGGTTTCACTCCCAAATCGCCACAAGCTTGGGATACAATGGATTATTCACAGGGCTGTGTGAGGAGTGATCCGTGGAGTTGTAACGTTAAAGATAAAGATGGGTTTCGCAAGATTTCTGGCTTGAAATTGCCGGATACTATGCATTCTTGGGTTGATGGAAGTATGAAGCTTGAGAATTGTGAAGCCAAGTGCATGGGGGATTGTTCTTGTACGAGTTATACGGCGTTGAATGCGAGTGATGGTAGTGGCTGTGTTATTTGGTTTGGTGAACTTCTTGATTTGAGAGTCTCTGACGGAGGACAGGATTTGTATGTCAGAATGGCTTATACAGAAGAAAATAATGAAGAGAGAGGAGAAGAAGATTTGGAGCTTCCCATGTACGACCTTGCTACAGTAGTGAAGGCCACTAACAACTTCTCTATTGACAATAAACTTGGTGAAGGAGGGTTTGGGCCAGTATATAAGGGTACACTTGAAACTGGACAAAAAATTGCAGTCAAACGACTTTCAGGAAGTTCTAGACAAGGAATGAATGAATTTAAGAATGAAGTAATATTGTGTGCTAAACTTCAACATCGAAATCTTGTGAGGGTTCTTGGTTGTTGCATTCAAGAAGATGAAAAGATGCTAGTTTATGAATACATGTCTAACAAAAGCTTAGACTTGTTTCTTTTCGGTTAG 1032 0.4244 MLWKGSVKYHRIGPWSGLGFSGAPLWRGTQLILQNMINTTNQVYYSYNLIQGTSMMITITLVNQTLNLRQQIVWVPQDKTWKPFLSFPRDNPCDVYNTCGPFGYCISNRSPNCECLQGFTPKSPQAWDTMDYSQGCVRSDPWSCNVKDKDGFRKISGLKLPDTMHSWVDGSMKLENCEAKCMGDCSCTSYTALNASDGSGCVIWFGELLDLRVSDGGQDLYVRMAYTEENNEERGEEDLELPMYDLATVVKATNNFSIDNKLGEGGFGPVYKGTLETGQKIAVKRLSGSSRQGMNEFKNEVILCAKLQHRNLVRVLGCCIQEDEKMLVYEYMSNKSLDLFLFG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212762g00001 343 SMART ntp_6 147 224 IPR003609 -
Stsc212762g00001 343 CDD PAN_AP_plant 147 225 - -
Stsc212762g00001 343 ProSiteProfiles PAN/Apple domain profile. 144 225 IPR003609 -
Stsc212762g00001 343 Pfam S-locus glycoprotein domain 11 123 IPR000858 GO:0048544
Stsc212762g00001 343 SUPERFAMILY Protein kinase-like (PK-like) 241 342 IPR011009 -
Stsc212762g00001 343 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 341 - -
Stsc212762g00001 343 Pfam PAN-like domain 144 211 IPR003609 -
Stsc212762g00001 343 Pfam Protein tyrosine and serine/threonine kinase 257 341 IPR001245 GO:0004672|GO:0006468
Stsc212762g00001 343 ProSiteProfiles Protein kinase domain profile. 256 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212762g00001 343 Gene3D Phosphorylase Kinase; domain 1 219 331 - -
Stsc212762g00001 343 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 221 331 - -
Stsc212762g00001 343 ProSiteProfiles EGF-like domain profile. 89 125 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212762g00001 Stsc-Chr212762 9815 11682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212762g00001 243 342 Receptor kinase-like Gene Family AT4G23190 61.000 1.71e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc212762g00001 S_locus_glycop 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212762g00001 - - gmx:100790436 408.297