Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212759g00001 ATGAGCATGAAGCTGAGTCGCTTCATATTATCTTTCATGATCATTGGAGCAATGTTCTCTGGCGTTGAGTCTGAACCATTGGAAGATAAACAAGCTCTGCTTGATTTCTATCACAACATTGATCACCCAAAGCATCTCAATTGGGATTCCAAGACTTCTGTATGCAAGAGCTGGACAGGAGTTACCTGTGACTCTGACCAATCCCGAGTCGTCGCCCTTCGGCTACCGCGAGCCGGATTAATTGGTCTCATCCCATCCAACACTCTCAGCCGCCTCTCAGCGCTTCAGATTCTGAATCTCGAATCAAATAGCATAACTGGTTCTTTTCCTACTGGTTTCTCTAAGCTGAAGAGCTTGACTTATATTTATCTGCAAGATAACAAGTTTTCTGGCCCATTGCCATTGGATTTTTCTGTTTGGAAAAATCTTACCATAGCAGATTTTTCCAACAATTCTTACGTTGGGAGCATCCCTTTCTCAATTTCAAAGTTGACTCACCTCAGTTCTTTAATTTTAGCCAACAACTCTCTTTCTGGTGAAATTCCTGACCTCAATGTTCCTAGCTTGCAAGAGCTGAATTTGGCCAACAATAACCTTAGTGGATTTGTGCCTAAATCCCTTCAGAGATTTCCAAGTTGGGTCTTTTCTGGTAATAAGCTTAATCTTAATCTTAATCATAATGCCACCTCTGAATATGCATTTGCTGATTCCCCTCTTCAACAACCGAAAAATTCTCATCCAAAAAAGAAAAACAAAAGGCTTAGTGAATCAGCATTGCTTGGTATCGTGATAGCTGTTAGTCTTGTGGGATTTGCAGCCATTGCAGCTTTCATGATTGTCTTCTGTTATAAGAAAGGTGGCGGTGGTGGAGGTGGAGAGTCAGTTATGAAGTCCCATAAAACAGAATTCTCGGCGAAGACGGAAGCTTCTGCAAGTGGAGACAGTAACAAAATCGTCTTCTTTGAAGGCTGCAATCTTGCATTTGACTTGGAGGACTTGTTGAGAGCCTCTGCTGAGGTTCTTGGAAAGGGCACGTTTGGAACTGTGTATAAGGCTGCTATAGAGGATACAACAACGGTGGCGGTGAAGAGGTTGAAAGATGTAACCGTTGGAAAACGCGAGTTTGAACAGCAGATGGAGGTGGTAGGGAGAATTAGGCATGACAACTTGGCTTCTCTAAGAGCTTATTATTACTCAAAAGAGGAGAAACTTATGGTATATGATTACTATGAACAGGGCAGTGTTTCTTCAATGTTACACGGCAAGAGACGGGAAGGGAGGGCTTCGTTAGATTGGGAAAGCCGGCTAAGGATTGCGATCGGCACGGCAAGAGGGATTGCTCATATCCATTCACAAAACGGTGGGAAACTAATCCACGGTAACGTCAAATCCTCAAATATCTTTCTCAATTCCCAGGGATATGGTTGTCTCTCGGACACCGGCCTGGCAACGTTAATGAGCCCAATACCACCAGCTGCACTAAGGGCAGCAGGATACCGTGCACCGGAAGTAACAGACACGCGGAAAGCAACTGCGGCATCCGATGTCTACAGTTTCGGAGTCCTTCTTCTAGAGCTCCTAACAAGGAGGTCTCCAATGCATGCCACTGGTGGAGAGGAAGTAGTCCACTTAGTTAGGTGGGTGAACTCTGTTGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTGGAGTTACTAAAGTACCCCAACATAGAGGAAGAAATGGTTGAGATGCTACAATTGGGGATGGCATGTGTTTCTAGGGTTCCAGATAAGAGACCAACAATGGTGGAAGTAGTGAGAATGGTGGAAGAAATTCGAGTACACTGGGGGAATAGACCGTCCACGGAATCTAGATCCGAGAGTTCTACACCGAATGCAATTGAGATGCCTTGTTCCACATCAATTGTTACACAGTGA 1920 0.4443 MSMKLSRFILSFMIIGAMFSGVESEPLEDKQALLDFYHNIDHPKHLNWDSKTSVCKSWTGVTCDSDQSRVVALRLPRAGLIGLIPSNTLSRLSALQILNLESNSITGSFPTGFSKLKSLTYIYLQDNKFSGPLPLDFSVWKNLTIADFSNNSYVGSIPFSISKLTHLSSLILANNSLSGEIPDLNVPSLQELNLANNNLSGFVPKSLQRFPSWVFSGNKLNLNLNHNATSEYAFADSPLQQPKNSHPKKKNKRLSESALLGIVIAVSLVGFAAIAAFMIVFCYKKGGGGGGGESVMKSHKTEFSAKTEASASGDSNKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAAIEDTTTVAVKRLKDVTVGKREFEQQMEVVGRIRHDNLASLRAYYYSKEEKLMVYDYYEQGSVSSMLHGKRREGRASLDWESRLRIAIGTARGIAHIHSQNGGKLIHGNVKSSNIFLNSQGYGCLSDTGLATLMSPIPPAALRAAGYRAPEVTDTRKATAASDVYSFGVLLLELLTRRSPMHATGGEEVVHLVRWVNSVVREEWTAEVFDVELLKYPNIEEEMVEMLQLGMACVSRVPDKRPTMVEVVRMVEEIRVHWGNRPSTESRSESSTPNAIEMPCSTSIVTQ 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212759g00001 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 410 616 - -
Stsc212759g00001 639 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212759g00001 639 Gene3D Transferase(Phosphotransferase) domain 1 410 625 - -
Stsc212759g00001 639 SUPERFAMILY Protein kinase-like (PK-like) 339 609 IPR011009 -
Stsc212759g00001 639 Pfam Leucine rich repeat 81 129 IPR001611 GO:0005515
Stsc212759g00001 639 FunFam Probable inactive receptor kinase RLK902 26 185 - -
Stsc212759g00001 639 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524
Stsc212759g00001 639 MobiDBLite consensus disorder prediction 613 639 - -
Stsc212759g00001 639 Gene3D Ribonuclease Inhibitor 27 243 IPR032675 -
Stsc212759g00001 639 CDD STKc_IRAK 341 606 - -
Stsc212759g00001 639 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Stsc212759g00001 639 SUPERFAMILY L domain-like 29 227 - -
Stsc212759g00001 639 FunFam pollen receptor-like kinase 1 304 409 - -
Stsc212759g00001 639 Gene3D Phosphorylase Kinase; domain 1 300 409 - -
Stsc212759g00001 639 PANTHER OS05G0588300 PROTEIN 13 620 - -
Stsc212759g00001 639 MobiDBLite consensus disorder prediction 615 639 - -
Stsc212759g00001 639 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212759g00001 639 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212759g00001 Stsc-Chr212759 9010 12030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212759g00001 21 628 Receptor kinase-like Gene Family AT4G23740 55.414 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc212759g00001 Pkinase 5.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212759g00001 - - aprc:113851984 868.611