Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212755g00002 ATGAAGCAAAGGCCTCTTCCTCCTCCGTCGTCTTCTCCGTCGATGAGACCTAAAATGGAGGCAACACAGGAAAAATGCTGGAGAATGGAAGTCGAGGACAATCTGAAGCGCCTCCAGTCTCTTCAGTTCGGCGCCGACCACGCCCTCACCACCCAGGACTTCTCCTCCGCCTATGTCCTCGCCCTCCGCCTCCTCGGCTTCCTCGACTCCCACTCCCATTCCGACGTCGACGAAGCCTTCCTCCACCCTATTCGCCGCCAAACCCTCTCCACTCTCGCCTCCGCTCACCGATCACTCACTCCTGATTCCGATCGCCTAGCTTTTGAACAAGCAAAGAAGCCCCAGGGGCGTGTTTTTGCCACATCAGGTGAAATTGACATTGATAAGATCCGCAAGTCGAAGTATTTTCGAGCTCAATCTGACGAAATTGACGAGAATCAGTTGGGTGAACAAATTGAGAAGCAAGACAAAGCGTGGGAGAGGGCGTCAAGGGAAATGGTGCAAGCTAAGCTTACATTGGTGTATGGGAAGAGTGCGTTGAGGAATGATAATTCTACCAAGAGCTCTCTCAATTTGAAGGATAATGGCTCTGAGGAATGCGTTGTTGTTGAGAGGCCTCAATTTCATAACAGCCATACAAAGGGTTCTGCTGTTTCTTCTTTCTTGCAGGTTGAAGAGGAAGAAAGAATGAACTCTTTCGGGAAGAAACGCGTGCATATGGAAATTAATAATAGTCCCAAAGTTGGTTATTCCAGGTCACCTTCAAGCAAGGAGGATGTTAACCCTGAAGTTTCTGGCAATGGATTTGTTACTGCTAGAGCCAAATTGGAAATGGAAACAAGGCAAAAGAGAGGAGGAGTTGGTTCACCCAATGCACCTGTATCCCCACAAGGCGATAACAATCCTTCCAATAGGTTATATGGTGGGAGATCGTATGGCATTTCACGGCGTGGCTTCCGTGGTAATTTTGTTCCACCCATTAAATCAAATGGGAGTAATGTTGGAAATGTGACTTCGCGAATTGCTGGAAAGGGAGATGATTCTTTAGAGGACTCTACCAAAAGATGTTTGGAAATGCTGTGTGGGCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATCGAGCATGTTAGTAATGAGATTATGGATAGAGATCCTAATGTCCGTTGGGATGACATTGCTGGGTTGGAGCATGCCAAGAAATGTGTCACTGAAATGGTTATATGGCCTCTGCTACGTCCAGACATATTTAAGGGATGCCGGTCACCTGGTAGAGGTTTGCTCTTATTTGGTCCACCGGGAACTGGTAAAACAATGATAGGCAAAGCAATAGCTGGGGAAGCAAAGGCAACTTTCTTTTACATATCTGCAAGTTCATTGACAAGCAAATGGATTGGTGAAGGCGAAAAACTAGTACGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAGATAGATTCACTTCTCTCTCAGCGCAAGTCAGATGGTGAGCACGAATCAAGTAGAAGGCTTAAGACACAATTTCTCATAGAAATGGAAGGCTTTGATAATGGCAGCGAACAAATTCTACTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCAAGAAGGAGACTTACCAAAAGACTATATATCCCCCTACCCTCCTCAGAGGCTAGAGCTTGGATTATACGTAACCTACTAGAGAAAGATGGATTATTCAATCTATCAAGGGAGGAATTAGGTACCATATGTAAAATAACCGAAGGTTATTCAGGATCTGACATGAAAAACTTAGTGAAGGATGCATCTATGGGTCCCCTAAGAGAGGCANNNNNNNNNNTAAGTTGA 1875 0.4565 MKQRPLPPPSSSPSMRPKMEATQEKCWRMEVEDNLKRLQSLQFGADHALTTQDFSSAYVLALRLLGFLDSHSHSDVDEAFLHPIRRQTLSTLASAHRSLTPDSDRLAFEQAKKPQGRVFATSGEIDIDKIRKSKYFRAQSDEIDENQLGEQIEKQDKAWERASREMVQAKLTLVYGKSALRNDNSTKSSLNLKDNGSEECVVVERPQFHNSHTKGSAVSSFLQVEEEERMNSFGKKRVHMEINNSPKVGYSRSPSSKEDVNPEVSGNGFVTARAKLEMETRQKRGGVGSPNAPVSPQGDNNPSNRLYGGRSYGISRRGFRGNFVPPIKSNGSNVGNVTSRIAGKGDDSLEDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDNGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKDGLFNLSREELGTICKITEGYSGSDMKNLVKDASMGPLREAXXXXS 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212755g00002 624 MobiDBLite consensus disorder prediction 246 262 - -
Stsc212755g00002 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 611 IPR027417 -
Stsc212755g00002 624 MobiDBLite consensus disorder prediction 1 22 - -
Stsc212755g00002 624 FunFam Fidgetin like 1 563 623 - -
Stsc212755g00002 624 Gene3D - 391 562 IPR027417 -
Stsc212755g00002 624 MobiDBLite consensus disorder prediction 279 311 - -
Stsc212755g00002 624 MobiDBLite consensus disorder prediction 245 266 - -
Stsc212755g00002 624 SMART AAA_5 428 564 IPR003593 GO:0016887
Stsc212755g00002 624 PANTHER AAA DOMAIN-CONTAINING 207 620 - -
Stsc212755g00002 624 Pfam ATPase family associated with various cellular activities (AAA) 432 562 IPR003959 GO:0005524|GO:0016887
Stsc212755g00002 624 Gene3D - 563 620 - -
Stsc212755g00002 624 MobiDBLite consensus disorder prediction 293 308 - -
Stsc212755g00002 624 FunFam Fidgetin-like 1 391 573 - -
Stsc212755g00002 624 ProSitePatterns AAA-protein family signature. 534 553 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212755g00002 Stsc-Chr212755 4658 9878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212755g00002 347 619 Calmodulin-binding Proteins AT3G56690 34.507 1.09e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212755g00002 K22766 - gmx:100789161 925.62