Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212753g00001 ATGAACCCATTTCATCCTCTTCCCAGGTTAAGTGACTCGTGCCCAACTTTCCGTGGAATTCCTGTTATGTCAACAAAGGATTTAGAACCTATGCAGGGAATTGTTGAAGGCGCTCTCTGCCAGGACAAAATGAATGTCCACAAAATTTTACACTATACCTGGAATGCATCCACCAAACCAAAGGTTTATCAAGAAAATCTTAATAATTTTTCTCACTCAACTAGGCCAAAGGGTTGGCCATGCTATCTGGTTTCCATTGTTGATGGACTTTATGTAGTTGAGAAACCTATTAGGTATTATCACCTAACTCAATATGCAATGAATGTTCCGAGGCAACTTCTCGACGTTGCTTTCACACATAATCCAAAACATATTATTGTCATAGACAGTCATTCAAAGATGTTTACAGTTCGGGTCAGAACAAAACATAAGAAACGGAGATCCATGGTTTTGGGGAGAGGCTGGAAAGAATACCAGTTGGCTAACGACCTGAAGAAAGGGGACGTCATCAGAATGTCGTTTAATCCAAAATATCCTGACCACCTTCGATGTGTTGCCCTTAAAAAATAG 570 0.4018 MNPFHPLPRLSDSCPTFRGIPVMSTKDLEPMQGIVEGALCQDKMNVHKILHYTWNASTKPKVYQENLNNFSHSTRPKGWPCYLVSIVDGLYVVEKPIRYYHLTQYAMNVPRQLLDVAFTHNPKHIIVIDSHSKMFTVRVRTKHKKRRSMVLGRGWKEYQLANDLKKGDVIRMSFNPKYPDHLRCVALKK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212753g00001 189 SUPERFAMILY DNA-binding pseudobarrel domain 92 175 IPR015300 -
Stsc212753g00001 189 CDD B3_DNA 120 170 IPR003340 GO:0003677
Stsc212753g00001 189 Gene3D - 88 180 IPR015300 -
Stsc212753g00001 189 ProSiteProfiles B3 DNA-binding domain profile. 92 189 IPR003340 GO:0003677
Stsc212753g00001 189 Pfam B3 DNA binding domain 106 173 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212753g00001 Stsc-Chr212753 1300 1993 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc212753g00001 B3 2.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212753g00001 - K16463 csin:114285447 42.743