Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212747g00001 ATGGAAAGGATTCAAGATAAGGAAGATGAAAATAGTATATCTGAGCATTCGCCTTCATCGGTTGTTGCTCTAGCAATTAAGGGTAACAAGAAAAGCAAATATGTGGTGCAGTGGGCACTCAATAAGTTTATCCCTGAGGGTATGATTGTCTTCAAGCTGATACACGTCCATCCCGGTATAAAAGGAGTTCCAACACCAATGGGAAATGTGCTTCCAATTTCACAAGTGCGTGCTGATATAGCAAACGCTTTCAAAAAGGAAGTGGAGTGGCAGACACATCAAAGGCTTCTACCTTTCAAGAAAATGTGTGAGCAGAGAAAGGTCCATGCAGATATTGTGATGATTGAATCGGATGATGTGGCAAGTGCAGTAGCAGAGGAAGTAGCTAAGGGCGTTATAACGAAACTTGTCGTTGGAGCATCATCTCGTAGCATATTTACCAGTAAACATAAGGGTATGTCTGCAAAAATCTCAGTATGCACTCCAAGATTTTGTACAGTCTATGCTATTTCGAAAGGAAAACTGTCGATAAGACCATCAGACATACAAGTTGATGGTAACATTTTAGATGACGCTAGCGGAACCAGTTTTTCCTCCAGCAGCTCATCAAATTACACTTCAACCTCTCAGACAGACACTGGCTCGGTTGTATCATATGCTCCTTCGCATTCACCTTCCTTAACAGCACAGCGATTCCAAGCTCTTTCAAGTATAAACCAGACATTATTGAAGACCAGTACCAGTTTAACCGAAACTAATCATTCTAGAGCCCAATCTGTAGATTTTGGGAGAGAGACTACTACTTCAATTTCTGCCAGAAACTCTGATATTGATTATGGTTTGAATCGTTCCTCTAGTTTCAAAAGTGTTATATCTGATACCGAATCTTGGAATTGTGATCAATATTCTGCCAATGATGAGCCATTAGCAATTGAACTTCCTTCGCCTAATAGGCAGGAAAATGTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGAATGCATGCAGTAGCTCAAAGTGAAAGCATAGATGCATCACGAAAGTTGAACGACCTAAACAAGAGGCGATCAGAAGAATCCATGAAACTGAAGGAGATTCTTGCTAAGGAGGACATGGCCAAAGAATTGGCAAGACAAGAAAGAGAGAAATATGAAGCTGCAGCAAGAGAAGCCGAATACTTGAAAGAGTGTGCTGAAAGAGAAGCTGCAGAAAGAAAAGAAGCAGAGTTGAAGGCTATTCGTGCTGCTAAAGAGAAAGAAAAGCTGGAGGATGCTATTACTGGTTCCACGCCCTTGTACCGAAAGTTTACTTGGGATGAAATAGTGTCTGCTACCTCATCGTTCTCTGAAGATTTGAAAATTGGAATGGGAGCATATGGAAAGGTGTACAAGTGCAGTTTGTATCATACAACTGTTGCTGTTAAAGTTCTTCACCCTAATAGGAGCCACGACAGCAAGCAATTCCAGCAGGAGCTTGAGATACTTAGCAGAACTCGTCATCCAAACTTGCTACTTCTTCTCGGAGCATGCCCTGAACATGGATGCATTGTGTATGAATATATGGAGAGTGGTAACTTGGACGAAAGATTGCTCCGGAAAAACAATACCTCCCCGATTCCATGGTTTGATAGGTATCGAATAGCATGGGAAGTTGCATCAGCTCTATCCTTTCTTCACAGTTCAAAGCCGAAACCTATCATCCATCGTGATTTGAAGCCGGCGAACATCCTTCTTGGTCGTAACCTTGTCAGCAAGATTGGTGATGTTGGCCTTTCGACGATGCTTCAGTCAGATAATTTATCCACCATGTACAAGGACACTGAGCCTGTTGGGACACTCTGCTACATAGATCCTGAGTATCAAAGGAATGGACTAATATCTCCAAAATCAGATGTTTATGCTTTGGGAATAGTTATCTTACAGTTATTGACTGCAAAACCAGCCATAGCAATTACTCATGTGGTCGAAACAGCAATTGGTGGTGGGAAATTGAAGGATATATTGGATCCAGAGGCAGGAAGTTGGCCATATCAAGAGACATTAGAATTAGCTCAATTAGGACTGAGCTGTGCTGAACTTCGGCGAATAGACCGGCCTGATTTGAAAGATCAAGTTCTTCCTACACTAGAGAGATTGAAAGAAATTGCTGATAGGACTCAGCAATCTCCTTCAATAGTAACTGTTAGATCCAGACCTCCCAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATACATACGATCGGAAAGCAATCGAAAAGTGGTTTCAAGAGAATGACAAATCACCGATGACGAATATGGCCTTGCCACACAAGCATCTAATTCCTAATTACACTCTACTGTCAGCAATTATGGAATGGAAGTCTCAATAA 2418 0.416 MERIQDKEDENSISEHSPSSVVALAIKGNKKSKYVVQWALNKFIPEGMIVFKLIHVHPGIKGVPTPMGNVLPISQVRADIANAFKKEVEWQTHQRLLPFKKMCEQRKVHADIVMIESDDVASAVAEEVAKGVITKLVVGASSRSIFTSKHKGMSAKISVCTPRFCTVYAISKGKLSIRPSDIQVDGNILDDASGTSFSSSSSSNYTSTSQTDTGSVVSYAPSHSPSLTAQRFQALSSINQTLLKTSTSLTETNHSRAQSVDFGRETTTSISARNSDIDYGLNRSSSFKSVISDTESWNCDQYSANDEPLAIELPSPNRQENVNLELEKLRIELRHAQGMHAVAQSESIDASRKLNDLNKRRSEESMKLKEILAKEDMAKELARQEREKYEAAAREAEYLKECAEREAAERKEAELKAIRAAKEKEKLEDAITGSTPLYRKFTWDEIVSATSSFSEDLKIGMGAYGKVYKCSLYHTTVAVKVLHPNRSHDSKQFQQELEILSRTRHPNLLLLLGACPEHGCIVYEYMESGNLDERLLRKNNTSPIPWFDRYRIAWEVASALSFLHSSKPKPIIHRDLKPANILLGRNLVSKIGDVGLSTMLQSDNLSTMYKDTEPVGTLCYIDPEYQRNGLISPKSDVYALGIVILQLLTAKPAIAITHVVETAIGGGKLKDILDPEAGSWPYQETLELAQLGLSCAELRRIDRPDLKDQVLPTLERLKEIADRTQQSPSIVTVRSRPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWFQENDKSPMTNMALPHKHLIPNYTLLSAIMEWKSQ 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212747g00001 805 MobiDBLite consensus disorder prediction 194 220 - -
Stsc212747g00001 805 ProSiteProfiles U-box domain profile. 736 805 IPR003613 GO:0004842|GO:0016567
Stsc212747g00001 805 SUPERFAMILY RING/U-box 733 804 - -
Stsc212747g00001 805 Pfam U-box domain 738 804 IPR003613 GO:0004842|GO:0016567
Stsc212747g00001 805 CDD STK_N 21 173 - -
Stsc212747g00001 805 Coils Coil 354 430 - -
Stsc212747g00001 805 Gene3D Phosphorylase Kinase; domain 1 431 525 - -
Stsc212747g00001 805 PANTHER OS02G0152300 PROTEIN 21 801 - -
Stsc212747g00001 805 CDD RING-Ubox_WDSUB1-like 738 792 - -
Stsc212747g00001 805 ProSiteProfiles Protein kinase domain profile. 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212747g00001 805 SMART Ubox_2 740 802 IPR003613 GO:0004842|GO:0016567
Stsc212747g00001 805 Gene3D HUPs 9 150 IPR014729 -
Stsc212747g00001 805 SUPERFAMILY Protein kinase-like (PK-like) 435 708 IPR011009 -
Stsc212747g00001 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Stsc212747g00001 805 Coils Coil 319 346 - -
Stsc212747g00001 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 805 IPR013083 -
Stsc212747g00001 805 Gene3D Transferase(Phosphotransferase) domain 1 526 734 - -
Stsc212747g00001 805 SMART serkin_6 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212747g00001 805 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Stsc212747g00001 805 Pfam Protein tyrosine and serine/threonine kinase 458 706 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212747g00001 Stsc-Chr212747 1857 6888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212747g00001 1 804 U-box Gene Family AT4G25160 51.613 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc212747g00001 PK_Tyr_Ser-Thr 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212747g00001 - - gsj:114409387 1206.43