Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212741g00002 ATGTTTAGCTCTCACCGTTACAAACCCCTTCTCTATTTAAACCTAAATCTTCTATTCCGAAGAACACCACCAACCCCCCTCATGTTCTGCACTTCACAATCACACTCTTCCACTGTTTCATACCTCATCAATAACCTTGCCTTCACCCCACAAGCTGCTCTAACTCTAACCACTTCAAAACGGTTTTGTTTCAATGACCCACACAAAGCAGACACAGTCCTCGTACTCTTCAAAACCCATGGATTCTCCAATTCCCAAATTGCTACCATTGTTACCAAGCTACCCGCAATACTTGCATCCAATCCACAAAGGATGCTGCCAAAGTTCCAATTTTTAGCCTCCAAAGGTGCTTCCACCCATGACATTGTTCTTCTAACAACTAGACACCCTAAATTCTTGCATTCTAGCCTCAAGAACCGCATAATCCCTACTTATGGATTGCTCAAAGCCTTGTTTCGATCCGATGAGAAAGCGCTCAGCTGCATTGTTTCTTGCCCTGCCTCGTTAATGGATTCTCGCTTGCCGAAAAACATCAAGTTGTTGGCTGATGCCGGAGTCTCCGACTCCGCCATCTACCATTTGTGTCGTACCAGAACGTCTGTGCTCATGTCTTCTGACTTGGGGAAACCTGTGGACGAAGTAAAGAAATTAGGGTTTGATCCTTCATTGGTTAAGTTTGCTATAGCTTTGCAAGCCATAAGGACTCTGCCGAAATCACTGTGGGACGCCAAAGTTGATGTCCTGAAGAGATGGGGTTGGTCTGAAGAAACACTGTCCGAAGCATTCAGGAGGAACCCTTTATATATGCTCTCATCTAAGGATAAGCTTAATGAGGTGATGAAACTTTGGGTTAATCAATTAGGTTGGAATCCTTTGGCTCTTGCCAGGATGCCATGGCTTTTTGGATGTAATTTGGAGAGAAGGATCATTCCGAGGGCTTTCGTTCTCCAGCATTTACTTGCAAAAGGTTTGATAAAGAAGAACGACAATTGGGGTACGCCGTTTCTTATTCCGGAAGACATGTTCCTTAAGAAGTTCGTCGAATGTTTTACAGAAGAGAAGTCTCAACCAAGTGAAGATGATAGGATGATATTCAAGAATGAGACCCTTGACCTTGATAAGTTGAAGCAAGAAATAATCAACTTGGTCACTAATGGTGTAAGGAGTGGGATTTGA 1176 0.4345 MFSSHRYKPLLYLNLNLLFRRTPPTPLMFCTSQSHSSTVSYLINNLAFTPQAALTLTTSKRFCFNDPHKADTVLVLFKTHGFSNSQIATIVTKLPAILASNPQRMLPKFQFLASKGASTHDIVLLTTRHPKFLHSSLKNRIIPTYGLLKALFRSDEKALSCIVSCPASLMDSRLPKNIKLLADAGVSDSAIYHLCRTRTSVLMSSDLGKPVDEVKKLGFDPSLVKFAIALQAIRTLPKSLWDAKVDVLKRWGWSEETLSEAFRRNPLYMLSSKDKLNEVMKLWVNQLGWNPLALARMPWLFGCNLERRIIPRAFVLQHLLAKGLIKKNDNWGTPFLIPEDMFLKKFVECFTEEKSQPSEDDRMIFKNETLDLDKLKQEIINLVTNGVRSGI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212741g00002 391 PANTHER CGI-12 PROTEIN-RELATED 34 350 IPR003690 GO:0003690|GO:0006355
Stsc212741g00002 391 Gene3D Transcription termination factor 3, mitochondrial 170 355 IPR038538 -
Stsc212741g00002 391 Pfam mTERF 243 326 IPR003690 GO:0003690|GO:0006355
Stsc212741g00002 391 Pfam mTERF 75 278 IPR003690 GO:0003690|GO:0006355
Stsc212741g00002 391 FunFam Mitochondrial transcription termination factor-like 137 354 - -
Stsc212741g00002 391 SMART mt_12 88 118 IPR003690 GO:0003690|GO:0006355
Stsc212741g00002 391 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Stsc212741g00002 391 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Stsc212741g00002 391 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212741g00002 Stsc-Chr212741 10511 12434 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc212741g00002 mTERF 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212741g00002 K15031 - gmx:102666739 318.161