Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212737g00001 ATGAGTCAGTGTGTTCCCAGCTGGGAGGTGGAGGACACCAATCCACCGCCCCCAAGACCCTCTCACCGCTTCAACTCCAACTCAACTATCCCTGACGTTCCCATGTTAGACTATGAAGTTGCAGAACTAACATGGGAAAATGGACAGCTATCAATGCATGGCTTAGGGTTCCCGCGAGTGCCGACTAAATCCTCGGCGGTTTCAACAACCGCCAATAACACAACACCACCTTCAAAGTACCCATGGGAAAAGCCTCGTGCAAGTGGCACGTTGGAATCCATAGTAAACCAAGCCACTATCATACCCCAAAACGCCAAATCAACAACGTTCCACGGAATCGGCGGCAGCGATTGTAATAATAATACTGGCGGTGATGGTGGTGGCAGTGGAGGCTGCAGTGTTTACGAAAATCTATTAGTTCCATGGTTTGATCCCCACCGTGTTGCTACCACCGTTATTCCGGCCGGAACCCCAAACACAATGACCATGGACGCGTTGGTGCCATGCTCGGATCAAAGAACGCCGCCGCAAGTTATGGACTCCATCCCCGGAGGGCTTGGAGCGTGCATGGCGGGTTCCTCCGTACGTATTGGCTCCGGCGACTGTGGCGGTGCCAAAGATGATGGCGCGCTTGAGAAGCAGACCAGGACGGGACGTGTGCCGGCATCAGCTATGTCGGCACATGATGAGATGAGTAGAAGGGATCAGAGTGTGAGTGCCGGCGCCACCTTTGGGAGGGAGAGCCAGCACGTGACACATGACACGTGCGACAGAGAGTTCGGATTGGGTTACACTTCCACGTCGATGGGGTCACCGGAAAATACAATAAGCTCCGCAAAGCAGTGCACCAAGACCAACACCATTGATGACCATGATTCTGTTTGCCACAGTAGACCTATGAGAGAGGACGGAGATGAGAAGGAGAAAAAGAAGGAAACTGGTAAATCTTCGCTGTCCACTAAAAGGAGTAGAGCCGCAGCTATACACAACCAATCAGAAAGGAAAAGGAGGGATAAGATAAACCAAAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACGGACAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTCAAACAGTTGCAAGCACAAGTGCAGATGGTGAACAGGATAAACATGTCATCCATGATGCTTCCCATGACCATGCAACAACAGCTTCAAATGTCAATGATGGCTCCCATGGGCATGGGAATGGGGATGGGGATGGGGATGGGCATGGGCATGCCTGGGATGGGAATGGGGATGGATATGAACACACTTGGTCGCACTAATATACCTCCTGGAATCCCTTCGGTCCTCCACTCTTCCGCCTTCATGCCTATGCCTTCCTGGGATGCTGCTGCTACTGCTACTGCCGCTGCTGCTGCCGCCGCAGCCGGAGGTGGTGCTGACCGACTTCAAGGACCTCCACCCACCGCAATGCCTGACCATTTATCAACATTTTTCGGATGTCCGCCATCACAGCCCATGAGCTTGGATGCCTACAATAGGATTGCTGCCCTGTATCAGCAACTTCAGCACCAACCACCCCCAGCTTCAGGTTCCAATAAGAGCTGA 1593 0.5204 MSQCVPSWEVEDTNPPPPRPSHRFNSNSTIPDVPMLDYEVAELTWENGQLSMHGLGFPRVPTKSSAVSTTANNTTPPSKYPWEKPRASGTLESIVNQATIIPQNAKSTTFHGIGGSDCNNNTGGDGGGSGGCSVYENLLVPWFDPHRVATTVIPAGTPNTMTMDALVPCSDQRTPPQVMDSIPGGLGACMAGSSVRIGSGDCGGAKDDGALEKQTRTGRVPASAMSAHDEMSRRDQSVSAGATFGRESQHVTHDTCDREFGLGYTSTSMGSPENTISSAKQCTKTNTIDDHDSVCHSRPMREDGDEKEKKKETGKSSLSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMVNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMGMPGMGMGMDMNTLGRTNIPPGIPSVLHSSAFMPMPSWDAAATATAAAAAAAAGGGADRLQGPPPTAMPDHLSTFFGCPPSQPMSLDAYNRIAALYQQLQHQPPPASGSNKS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212737g00001 530 FunFam transcription factor UNE10 isoform X1 319 384 - -
Stsc212737g00001 530 Coils Coil 330 350 - -
Stsc212737g00001 530 MobiDBLite consensus disorder prediction 285 318 - -
Stsc212737g00001 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Stsc212737g00001 530 MobiDBLite consensus disorder prediction 1 29 - -
Stsc212737g00001 530 Gene3D - 319 384 IPR036638 GO:0046983
Stsc212737g00001 530 MobiDBLite consensus disorder prediction 64 79 - -
Stsc212737g00001 530 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 40 525 IPR031066 -
Stsc212737g00001 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 386 IPR036638 GO:0046983
Stsc212737g00001 530 SMART finulus 330 379 IPR011598 GO:0046983
Stsc212737g00001 530 MobiDBLite consensus disorder prediction 214 234 - -
Stsc212737g00001 530 CDD bHLH_AtPIF_like 324 385 IPR047265 -
Stsc212737g00001 530 MobiDBLite consensus disorder prediction 64 85 - -
Stsc212737g00001 530 Pfam Helix-loop-helix DNA-binding domain 329 374 IPR011598 GO:0046983
Stsc212737g00001 530 MobiDBLite consensus disorder prediction 285 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212737g00001 Stsc-Chr212737 1769 11500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212737g00001 1 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.683 9.90e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212737g00001 HLH 8.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212737g00001 - - ahf:112697399 717.998