Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212711g00003 ATGGCGGACTCCACTTTTACAGTAATATTTTCTATGGTTGGCGGAGTTATGGTGTTGTTCGTCCTTGTCTTTTTGTATTTAATTTGCCGCCAAATTATTAAGGAGGACATAGCTATGCTCCAGACACATCACCAGCAACTTGCAGCGCCTAATAATATAGAGAATTTCTTGAATCATATTCAAATGGAGAAGCCAATCAGATTCACTCATCACCAGCTACAGATTGCAACTGATAACTACTCCAGTTCCTTGGGCTCAGGAGGTTTCGGAAAAGTTTACAAAGGAGTTTTCAACTCCGTCATGATAGCTGTTAAGGTCCTCCATGGAAATTATTCTGACAAGAGAATTCAAGAACAGTTCATGGCTGAAATGGGAACACTTGGTAAAATCCACCATTTCAATCTTGTTCGGTTATATGGCTTCTGTTTTGAAGAAAACCTGACAGCATTGGTTTATGAGTACATGGAAAATGGTTCTCTTGACAAGTATTTGTTACAAGAAAACAATGTGTTAGGTTTTGAAAAGCTTCATGAGATAGCGGTTGGAACTGCAAGAGGCATTGCTTATTTGCATGAAGAGTGCCAACAGAGAATTATTCACTATGATATTAAACCGGCAAATATTTTGTTGGACCGGAATTTCAATCCTAAGGTTGCGGATTTCGGCTTGGCAATGCTTTATAACAGGGATAGCACTCATATATCTATGACTGCAGGAGGAGGAGGCAGGGGAACCCCCGGTTACGCCGCGCCGGAGCTGTGGATGCCGTTCCCTGTGACTCATAAGTGTGATGTTTATAGCTTTGGGATGTTGTTGTTTGAGATCATAGGCAGGAGAAGAAATGTTGATAGTAATGTTCCGGAGAGCCAAGAGTGGTTTCCAATGTGGGTTTGGAGAAAATTTGATGGTGGAGAGTTACATGAGTCAAGATTAGTGTGTGAATTGTTGTTGGAGAAACATAAGGTGATGGTAGAAAGAATGGTGAAGGTAGGTTTGTGGTGTGTTCAGTATAGGCCTGAATCAAGGCCTATGATGAGTGCTGTTGTCAAAATGTTGGAAGGCTCTGAAGAAATTCCACAACCTTTGAATCCATTTCAATACTTGATGGACAATGGTTTCACTGCTTCAGCTCAAGATTCATCAAATACCAACACTAGTACAACTTCAAGTAGTAGTGTAATTGCTGTCGAGTCCAATATTGTATCTAGCTAG 1212 0.4076 MADSTFTVIFSMVGGVMVLFVLVFLYLICRQIIKEDIAMLQTHHQQLAAPNNIENFLNHIQMEKPIRFTHHQLQIATDNYSSSLGSGGFGKVYKGVFNSVMIAVKVLHGNYSDKRIQEQFMAEMGTLGKIHHFNLVRLYGFCFEENLTALVYEYMENGSLDKYLLQENNVLGFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPANILLDRNFNPKVADFGLAMLYNRDSTHISMTAGGGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNVDSNVPESQEWFPMWVWRKFDGGELHESRLVCELLLEKHKVMVERMVKVGLWCVQYRPESRPMMSAVVKMLEGSEEIPQPLNPFQYLMDNGFTASAQDSSNTNTSTTSSSSVIAVESNIVSS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212711g00003 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Stsc212711g00003 403 FunFam Putative receptor-like protein kinase 155 360 - -
Stsc212711g00003 403 Gene3D Transferase(Phosphotransferase) domain 1 155 361 - -
Stsc212711g00003 403 SUPERFAMILY Protein kinase-like (PK-like) 53 353 IPR011009 -
Stsc212711g00003 403 SMART serkin_6 78 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212711g00003 403 Gene3D Phosphorylase Kinase; domain 1 52 154 - -
Stsc212711g00003 403 ProSitePatterns Protein kinases ATP-binding region signature. 84 105 IPR017441 GO:0005524
Stsc212711g00003 403 PANTHER OS07G0415500 PROTEIN 6 364 - -
Stsc212711g00003 403 ProSiteProfiles Protein kinase domain profile. 78 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212711g00003 403 Pfam Protein tyrosine and serine/threonine kinase 81 352 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212711g00003 Stsc-Chr212711 13192 14791 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212711g00003 67 385 Receptor kinase-like Gene Family AT5G38280 38.602 3.36e-72 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Stsc212711g00003 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212711g00003 - - gmx:100803355 494.197