Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212711g00001 ATAGCGGTTGGAACAGCAAAAGCCATTGCTTATTTTCATGAAGAGTGCCAACAAAGAATTATTCACTATGATATTAAACCAGAGAATATTTTATTGGACCGGAATTTCAATCCTAAGATTGCGGATTTTGGTTTAGCAAAGCTTTATAATAGGGATGATAATACTCACACTCATATATCATCTGTGAATGGAGGAGGAAGAGGAACCCCCGGTTACGCCGCGCCGGAGCTATGGCTGCCGTTCCCTGTGACTCACAAGTGCGATGTTTATAGCTTTGGGATGTTGTTGTTTGAGATCATTTGTCAGAGAAGAAATCTTGATACTAGTGTTTCGGAAGGGCAAGAGTGGTTTCCAATGTGGGTTTGGGGAAAATTTGATGGTGGAGAATTATTACAAGAGTTAAGATTAGTGTGTAAATTATTATTGGAGGAGGAACATCATGAGGTGATGGTAGAGAGAATGGTGAAGGTAGCTTTATGGTGTGTTCAGTTTAGGCCTGAATTAAGGCCTATGATGAGTGATGTTGTCAAAATGTTGGAAGGCTATGAAGAAATTCCAGAACCTTCGAATCCGTTTCAATACTTGATGGACAATGGTTTTGCTGCTCTTCCACAGCAAGATTCATGGAGTACCCGCAATGGCACAACTACGGCAACTTCAAGTAGTTATTGTGACTCTGGTGCCATTGTTGTAGATTCAGTTGTAAAATAG 711 0.4051 IAVGTAKAIAYFHEECQQRIIHYDIKPENILLDRNFNPKIADFGLAKLYNRDDNTHTHISSVNGGGRGTPGYAAPELWLPFPVTHKCDVYSFGMLLFEIICQRRNLDTSVSEGQEWFPMWVWGKFDGGELLQELRLVCKLLLEEEHHEVMVERMVKVALWCVQFRPELRPMMSDVVKMLEGYEEIPEPSNPFQYLMDNGFAALPQQDSWSTRNGTTTATSSSYCDSGAIVVDSVVK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212711g00001 236 SUPERFAMILY Protein kinase-like (PK-like) 1 181 IPR011009 -
Stsc212711g00001 236 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 190 - -
Stsc212711g00001 236 Pfam Protein kinase domain 3 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212711g00001 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 20 32 IPR008271 GO:0004672|GO:0006468
Stsc212711g00001 236 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212711g00001 236 Gene3D Transferase(Phosphotransferase) domain 1 1 191 - -
Stsc212711g00001 236 SMART serkin_6 1 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212711g00001 Stsc-Chr212711 5497 6301 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212711g00001 1 194 Receptor kinase-like Gene Family AT5G38280 41.294 1.12e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Stsc212711g00001 Pkinase 6.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212711g00001 - - gmx:100816921 292.737