Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212696g00001 ATGACGGACCTTGCGTCCAAACCGTTTGAGAAAGTTATCGAGTATTTACTGGATGCGACTATTCGACAACTTGATTACATTATTTTTTGCAACAGTCATGTGAAGGAGCTAAAACCACTCGTTGAGATACTCAAGATTAATAAGCAGTTGGTTGAAAGTAAAGTTGATTTGGCAAAAAACAATGCAAGACAAATCACACCTGCTGTGGAACATTGGCTCACGAGGGTCGATGAAAAGATAAAAGAAAGTGAGGAGTTTCATTGTCACAAAGCCCTCAGCTTCAAGACAGGATGCTCCAGCGGGGCTCTCCCTTTCTTGTGGTACCGGCGCAAACTAGGCAGGAGAGCAAAAAAGATGTTGGCACCTGAAATCAAGGATCTTAATTTGGAATGTGCTAGCACAGTTCTTCCAAACATTTCTTGTCCACAAGAAGCACCAAGCTATGCAGAAAGCAATCCATCTGATGGCGGCTATCTCGAATTCAAATCAAGAAAGGATATAATCGACAAAATCATGGGACACCTCAAAGATACCCGGGTGAGAATGGTTGGCCTGTACGGGCCTAGCGGTGTGGGCAAGACCTCTCTCGTCAAACAAATCGGAAAGCTAGCTTATGATAGTAGATTGTTTGAAAAGGTGGTGATAGCAATTGTAAAGAAAGATCCAGACCATCAAAAGATTCAGCAAGACATTGCCGATTACTTAGGGTTGACTTTTGAAAATGAAGGCGAGTTTGGGAGAGCAACTCGTTTGAGAAAGAGGCTGAAGCAGGAGAATACTCTTGTGATTCTGGATGACCTCTGGGATGTATTGGACTTGAAAAAAATCGGGATTCCATTTTATGATGATGATGTTTCAAGCAACGTGGCTGTCAAAGATAGAAATGAGGGTGGCGAAACAGATATTGGCGGCAAAAAGGTGAAAAATGAAGATTCTTCTGGGACCACCAAGGGATGCAAAATATTGGTCACTTCAAGACAGAGAGACGTATTGTGCAATAAAATGAATGCTAAAGAAAATTTAGCTTTCCTTGTGCCAGAGCTATATGTTGATGAAGCTTTCACATTGTTCAAGAAGGAGGTTGGAATGTCGAATGAAAATTTCAAGTTCAAGCCAGAGACTCTAATGAAGTACTGTGCAGGGCTACCCATGGCAGTAATTATAGTTGGAAGGTCCTTAATGAATAAGAGAGAGTCAGAGTGGGAAGGCGAACTAGAAAGACTCAAAAGCCAAGAATCAAATGAAGTGCACAAGTACATGGAGAATCATGTAAAGCTAGGCATACTTAAAGATGTCAATACGCTAAGGGATGCTCGTAAGAGCATATCCGAGTCAATCCAGAAGCTAAAGGTCTCAGGCTTGATGTTGGATAGTAATTCCAATGATCATTTCAATATGCATGATATAGTTCGAGATGCTGCTCTGTCTATAGCGTGCAAAAATCAAAATGCATTTATCCTGATGAACAAAACTCTTAATGAGTGGCCTGATGAGGAAGAACTCGAGAAGTGCCGTGCCATTTCTATATACAAGAGTCATATTGTGGATGAGCTCCCCGAAGTTGTTAATTGTCCTCACCTTAGATTCTTCCATATTGATAATGATGATCCAACATTGAAGATACCTGATAGCCTTTCAAGATCTAGAATTGAAGATTGGCCAGCAGTGTTGGGAGGCTTAAGCAAGTTACAATTGCTAGACATTAGCGATTGTTCAATAAGCAGCTCCACTGGACCTCTATCTTTATCAAGCTTCACCAATTTGGAGGAATTTTATGTATCAAACAGCTTGGCTAAAATGGAGGTGAAAGGACAAATATATAACAGTCAACATTCAATTCTTTCTGAGTTGAAACATCTACATCAATTGAATACTATGGAAGTTTGCATCCCCGGTACTGAATTTTTGCCTACGGACTTGTTTTTTCACGAGTTGAATGATTACAAGATCGTGATTGGAGACTTTGAGACACTTTCAATTGGGGATTTCAAGATGCCCCATAGATATGAAGCTTCAAGATCTTTGGCATTGCAGCTAGAACCTGGCATGGACGATATTCACTCTCTCAAGGGAATCAAATTGCTGTTGGGTATCAGAGGTATATATGTGGTGAAACTAACAACAAAAGAGATGAGAAGAATGGAATTGACACACAATATTTTACGTGGAAAACCCTTTGAAGGGTAA 2187 0.4051 MTDLASKPFEKVIEYLLDATIRQLDYIIFCNSHVKELKPLVEILKINKQLVESKVDLAKNNARQITPAVEHWLTRVDEKIKESEEFHCHKALSFKTGCSSGALPFLWYRRKLGRRAKKMLAPEIKDLNLECASTVLPNISCPQEAPSYAESNPSDGGYLEFKSRKDIIDKIMGHLKDTRVRMVGLYGPSGVGKTSLVKQIGKLAYDSRLFEKVVIAIVKKDPDHQKIQQDIADYLGLTFENEGEFGRATRLRKRLKQENTLVILDDLWDVLDLKKIGIPFYDDDVSSNVAVKDRNEGGETDIGGKKVKNEDSSGTTKGCKILVTSRQRDVLCNKMNAKENLAFLVPELYVDEAFTLFKKEVGMSNENFKFKPETLMKYCAGLPMAVIIVGRSLMNKRESEWEGELERLKSQESNEVHKYMENHVKLGILKDVNTLRDARKSISESIQKLKVSGLMLDSNSNDHFNMHDIVRDAALSIACKNQNAFILMNKTLNEWPDEEELEKCRAISIYKSHIVDELPEVVNCPHLRFFHIDNDDPTLKIPDSLSRSRIEDWPAVLGGLSKLQLLDISDCSISSSTGPLSLSSFTNLEEFYVSNSLAKMEVKGQIYNSQHSILSELKHLHQLNTMEVCIPGTEFLPTDLFFHELNDYKIVIGDFETLSIGDFKMPHRYEASRSLALQLEPGMDDIHSLKGIKLLLGIRGIYVVKLTTKEMRRMELTHNILRGKPFEG 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212696g00001 728 Gene3D Ribonuclease Inhibitor 442 648 IPR032675 -
Stsc212696g00001 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 420 IPR027417 -
Stsc212696g00001 728 SMART AAA_5 179 347 IPR003593 GO:0016887
Stsc212696g00001 728 Gene3D - 348 424 IPR042197 -
Stsc212696g00001 728 PRINTS Disease resistance protein signature 182 197 - -
Stsc212696g00001 728 PRINTS Disease resistance protein signature 558 574 - -
Stsc212696g00001 728 PRINTS Disease resistance protein signature 379 393 - -
Stsc212696g00001 728 PRINTS Disease resistance protein signature 254 268 - -
Stsc212696g00001 728 Gene3D - 152 342 IPR027417 -
Stsc212696g00001 728 SUPERFAMILY L domain-like 466 624 - -
Stsc212696g00001 728 Pfam NB-ARC domain 316 420 IPR002182 GO:0043531
Stsc212696g00001 728 Pfam NB-ARC domain 165 296 IPR002182 GO:0043531
Stsc212696g00001 728 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 25 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212696g00001 Stsc-Chr212696 9551 12020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212696g00001 180 412 WRKY Transcription Factor Family AT5G45050 27.347 4.88e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212696g00001 - - adu:107475819 794.267