Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212677g00002 ATGGAAAATGTTAGGGAGGATCATCATGAGATTGAGGACATGTCAATGTCACCACCTTCTGTTGGTTCCATGCAAATAGCTGGAAGCAATGGCTTTGTTCACAGCATGGAGTTCATGTCTCAAGCATATCTTCCCAATAGATACTCAGAAGTTGTCCTTCAAGTTGAGGATTCAAACATCAACCAAGATCCTCCACTCCCCATATATCTTAAGTTTGAGGATGTAGAGTTCAAAGTGAAAAATAGCCAAACAGATTCCAACAACCCTGTGAAGAAGATGGTATCAAAGGTGGCCACACAGCAAGTGGAACAAGAAAGATACAAGAAGATCCTTAAGGGTATCACAGGGAGCATTGGCCCTGGTGAAATTCTGGCTTTGATGGGTCCTTCTGGCAGTGGAAAAACAACTTTGTTGAGAGTAATTGGAGGAAGATTACTTGAGAATGTAAAGGGAAACATTACTTACAATGATGTTAGATTCAATCCTGCTATAAAGAGAAGGATTGGATTTGTTACACAAGAGGATGTGCTTTTCCCACAGCTTTCAGTAGAAGAAACATTGATCTTCTCTGCATTCTTAAGGCTACCAACCAACATGAGCAAGCAACAAAAATATGCAAAAGTGGAAACTACTATCAAGGAGTTAGGCCTTGAAAGATGTCGGCACACGAAAATCGGTGGAGGATTTCTAAAAGGCATATCAGGAGGAGAAAGAAAGAGAACTAGCATAGGCTATGAAATTCTTGTTGATCCTTCATTGCTGCTACTTGATGAACCAACTTCAGGCCTTGATTCAACCTCTGCAAACAAACTCCTCCTCACTCTTCAAGGACTTGCCAAGGGTGGAAGGACCATAATAACTACAATTCACCAACCATCAAGCAGAATCTTTCATATGTTTGACAAACTTCTTCTGATATCAGAAGGCTATCCTGTTTACTATGGAAAGGCTAGAGACTCAATGGAATACTTTTCTTCGCTGAGATTCGCGTCGGAGATACCGATGAATCCTGCAGAATTCTTGCTTGATTTGGCAACTGGCCAAGTGAATGACATAAGTGTTCCTCAAGAAATCTTGGGAGATCAACAATCTTCTGACCCTTCAAAAGCTGTTACTAAATATCTAAAACTCAAGTATAAAGAAATTCTGGAGCCAAGAGAAAAGGTAGAGAACCATGGAGTGGTAAACACACCAAAACATCTTCAGCTAGCAATTCAGGTTAAAAACGAGTGGACATTGAGTTGGTTGGACCAATTCATGATTCTTTATAAGAGAACATTCACAGCAAGATGCAAGGACTACTTTGATAAATTAAGACTAATTCAAGCCCTTGGAATTGCAATTATTTTGGGCCTGCTTTGGTGGAAATCCTCAACCAACACAGAGGCTCAACTAAGAGATCAGCCGATTGCAGGGGTTGATGTGTCTAGTTTTTTAATTGATCAGGGGCCGCTTTGGGGTATAATAACATTAAGGTGCGCCAAGTCCAAAATTAAAAAGGTTGGTTTAATGTTCTATATCTGTATATTTTGGACATCTTCATGCATATTTGGAGCAGTATATGTGTTTCCATTTGAGAAGGTCTACATAGTTAAAGAAAGGAAAGCAGACATGTACAGATTAAGTGTATACTATGCATGCAGCACTCTAAGTGACATGGTAGCACATGTTTTCTATCCTACTTTCTTCATGATTATCTTGTACTTCATGGCTGGATTTAAGAGGACGGTCGCGTGCTTCTTCTTAACGCTGATCGCGGTTCTGTTAATAGCCATAACAAGTCAAGGTGCAGGAGAACTATTTGGAGCTGCAGTTATGAGCATTCAAAGAGCAGGAATGGTTGCTTCTTTAATACTAATGTTATTCCTTCTAACTGGTGGCTACTATGTCCAGCACATACCAAAGTTCATGCAGTGGATGAAGTACCTTTCATACATGTACTATGGATTCAGACTTCTTCTAAAAGTGCAGTATTCAGGAGATGAACTCTATGAGTGTGAGAGCAAAGGAGGGTGTAGGACCCTTCAGAGTTCACCTTCATTTGACACTGTTAATTTGAAAGGTGGCTTACAAGAAGTTTGGATTCTCTTAGCCATGGCATTATGCTTCCGTTTTCTTGCTTACTTCTGCCTCCGGAGAAAGATTGATGTATGCAGTTATTAG 2163 0.4013 MENVREDHHEIEDMSMSPPSVGSMQIAGSNGFVHSMEFMSQAYLPNRYSEVVLQVEDSNINQDPPLPIYLKFEDVEFKVKNSQTDSNNPVKKMVSKVATQQVEQERYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLLENVKGNITYNDVRFNPAIKRRIGFVTQEDVLFPQLSVEETLIFSAFLRLPTNMSKQQKYAKVETTIKELGLERCRHTKIGGGFLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLQGLAKGGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKARDSMEYFSSLRFASEIPMNPAEFLLDLATGQVNDISVPQEILGDQQSSDPSKAVTKYLKLKYKEILEPREKVENHGVVNTPKHLQLAIQVKNEWTLSWLDQFMILYKRTFTARCKDYFDKLRLIQALGIAIILGLLWWKSSTNTEAQLRDQPIAGVDVSSFLIDQGPLWGIITLRCAKSKIKKVGLMFYICIFWTSSCIFGAVYVFPFEKVYIVKERKADMYRLSVYYACSTLSDMVAHVFYPTFFMIILYFMAGFKRTVACFFLTLIAVLLIAITSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYVQHIPKFMQWMKYLSYMYYGFRLLLKVQYSGDELYECESKGGCRTLQSSPSFDTVNLKGGLQEVWILLAMALCFRFLAYFCLRRKIDVCSY 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212677g00002 720 Gene3D - 95 329 IPR027417 -
Stsc212677g00002 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 325 IPR027417 -
Stsc212677g00002 720 MobiDBLite consensus disorder prediction 1 20 - -
Stsc212677g00002 720 Pfam ABC transporter 111 261 IPR003439 GO:0005524
Stsc212677g00002 720 CDD ABCG_EPDR 67 315 - -
Stsc212677g00002 720 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 57 707 - -
Stsc212677g00002 720 Pfam ABC-2 type transporter 418 658 IPR013525 GO:0016020|GO:0140359
Stsc212677g00002 720 SMART AAA_5 120 311 IPR003593 GO:0016887
Stsc212677g00002 720 FunFam ABC transporter G family member 22 98 327 - -
Stsc212677g00002 720 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 333 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212677g00002 Stsc-Chr212677 5229 10080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212677g00002 109 294 Calmodulin-binding Proteins AT2G36910 30.000 5.08e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212677g00002 K05681 - gmx:100815259 1147.5