Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212668g00001 ATGGAGCAGTTGGACATATANNNNNNNNNNGGATATTCAACTGCTCTTCATCATTCATCCCTTTCACCTCATGAAAAGCACTCTACAAATGCTCACATTATTTCACATTCATCGACTAACATGGCTACATTGCCACCATATTCTTCAAATAATGGACCACTACCTCCTAAACCATCTAGCCATTTTTCTAATGAAAACAGTGCCTCCTGGCATACAGAATCTGTGCCAAGCTTTCTGGATTTTCCTGCAAATACTTCTGTCGATAGTGGTAGGGTAGAAAGTGGTGACTGCACTATCATGGCATCTGAGGAATATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGATACTTTAACTTCTAATTTGAATGACCTTCTTGCTGATAGTGTTCCGGATCTTGAGCCAAAGCCATTCCAGGTTTCAAAACCATCTTTGCTATTACCTGGACATCCATCCCAAGGTGATCAACAACTTCCTGCTTCATCTGGAGAAAATTGCACTGGTGCTGCCCCTTCTTCCTCAGCAAATTCTGCTCCTGCCAAGCCACGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGATGCTGTCAACAAACTTGGTGGCAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGTTTAACTATATATCATGTTAAAAGCCACTTGCAGAAATACAGGACAGCTAGATATAGACCCGACTCAGCTGAAGGAGTCTCGGGGAAAAAAACAAGTTCCATCGAAGAGATGTCATCTCTAGATTTGAAAACTGGCATTGATATCACTGAAGCTCTGCGACTGCAAATGGTGGTTCAGAAGCAGTTGCATGAACAACTTGAGATTCAAAGAAATCTACAATTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAGTGTAAACCCGGCACTGAAATGTTTAAGGCATCATCTTCTACTGCTGAGAAACCATCTGGAGCCTCTTTGGATGCCATGCAAGATGTTCCAGCCAAAAGTGAAAAGGAAGCATCAAAAGTGGACAATTGCAAGCCAGGACCTGATCAAGCTAACAGCAGCGCCACAGTTGTGAAAGGTTCAGTGGAAATGGGAGGGAAGCATGGTTCTCCCAAAACACAACTTTCCGAGAATCATAAGCAGCGTGCCAATGCTAATGCTAATGATGATAGCGCTCAAGCCTCAAAGCGTCTAAGAACAGATGAGTAA 1257 0.4312 MEQLDIXXXXGYSTALHHSSLSPHEKHSTNAHIISHSSTNMATLPPYSSNNGPLPPKPSSHFSNENSASWHTESVPSFLDFPANTSVDSGRVESGDCTIMASEEYSKRNDWQEWADQLISDDDTLTSNLNDLLADSVPDLEPKPFQVSKPSLLLPGHPSQGDQQLPASSGENCTGAAPSSSANSAPAKPRMRWTPELHEAFVDAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSAEGVSGKKTSSIEEMSSLDLKTGIDITEALRLQMVVQKQLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGTEMFKASSSTAEKPSGASLDAMQDVPAKSEKEASKVDNCKPGPDQANSSATVVKGSVEMGGKHGSPKTQLSENHKQRANANANDDSAQASKRLRTDE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212668g00001 418 MobiDBLite consensus disorder prediction 323 337 - -
Stsc212668g00001 418 Gene3D - 187 246 - -
Stsc212668g00001 418 MobiDBLite consensus disorder prediction 392 409 - -
Stsc212668g00001 418 SUPERFAMILY Homeodomain-like 186 242 IPR009057 -
Stsc212668g00001 418 MobiDBLite consensus disorder prediction 16 68 - -
Stsc212668g00001 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 165 406 IPR044848 GO:0003700
Stsc212668g00001 418 Pfam Myb-like DNA-binding domain 190 241 IPR001005 -
Stsc212668g00001 418 FunFam Myb family transcription factor 187 245 - -
Stsc212668g00001 418 MobiDBLite consensus disorder prediction 134 190 - -
Stsc212668g00001 418 Pfam MYB-CC type transfactor, LHEQLE motif 274 319 IPR025756 -
Stsc212668g00001 418 MobiDBLite consensus disorder prediction 157 187 - -
Stsc212668g00001 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 245 IPR017930 -
Stsc212668g00001 418 MobiDBLite consensus disorder prediction 321 418 - -
Stsc212668g00001 418 MobiDBLite consensus disorder prediction 32 68 - -
Stsc212668g00001 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 188 242 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212668g00001 Stsc-Chr212668 12567 18313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212668g00001 11 366 G2-like Transcription Factor Family AT4G28610 50.278 3.02e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc212668g00001 Myb_DNA-binding 7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212668g00001 - - aip:107624999 687.182