Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212659g00001 ATGGAGAGTTTAATTGGTTGCCTGATCTGGCAGTTGCAGTTGAAGGAAGAGAACAAAGAAAATCAATTGTGCGAATCGATCGCTGTAGGGTTTGACTTAGAAAAGATGGGGAGAGGCAAGATTGCAATTCAAAGGATAGAGAATACAACAAACAGGCAAGTGACATTCTCAAAGAGAAGAAGCGGTTTGATGAAGAAAGCTAAAGAGCTCTCTATTCTTTGCGATGCTCAAATTGGTTTGATTGTTTTCTCCTGCACCGGCAAACTTTATGAATTTGCCAGCACCAGCATGAAATCTATCACGGAGCGCTATAACAAGGCAAAAGAGGACCATAATCAGTTAATGAACCCTGCTTCAGAAGCTAAGTTTTGGAAGCGGGAAGCCGCAACCTTGAGGCAGCAACTTCAGTACTTGCAGGAAAGTCATAGGAATTTAATGGGTGTAGAACTTTCTTGTTTGGGCATTAAAGAGACACAAGATTTGGAAAAACAACTGGAGATGAGTCTAAACAATGTCCGCAAGAAAAAGGAAGAACTTTTGACTCAAGAGATCAACCAACTGCACGATAAGGGTAAAAACATGGCGCAAGAATATGGAGAACTAGAGAAAAAGATTGACCTCATCCAAAGGGAGAATGAAGAACTGGAAAAAGTTGTTGAAGCATCATCGTCGAGGCCTAGGAATGAAGAAAATGCAACATCATCATCATCTTATCCCCCATACACGATAAGATATGGATATTTACCACCTCCTGCATCTGCCAATCAACAAGCAAACCGCCACCAGCAGAGTAGCGATTCCGCAGAGAGAGAAATGAAACTCAGATTACAGTTTCTGTAA 840 0.4143 MESLIGCLIWQLQLKEENKENQLCESIAVGFDLEKMGRGKIAIQRIENTTNRQVTFSKRRSGLMKKAKELSILCDAQIGLIVFSCTGKLYEFASTSMKSITERYNKAKEDHNQLMNPASEAKFWKREAATLRQQLQYLQESHRNLMGVELSCLGIKETQDLEKQLEMSLNNVRKKKEELLTQEINQLHDKGKNMAQEYGELEKKIDLIQRENEELEKVVEASSSRPRNEENATSSSSYPPYTIRYGYLPPPASANQQANRHQQSSDSAEREMKLRLQFL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212659g00001 279 Coils Coil 121 141 - -
Stsc212659g00001 279 Coils Coil 184 225 - -
Stsc212659g00001 279 ProSiteProfiles MADS-box domain profile. 36 96 IPR002100 GO:0003677|GO:0046983
Stsc212659g00001 279 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Stsc212659g00001 279 MobiDBLite consensus disorder prediction 225 241 - -
Stsc212659g00001 279 Coils Coil 155 182 - -
Stsc212659g00001 279 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 92 IPR002100 GO:0003677|GO:0046983
Stsc212659g00001 279 Pfam K-box region 119 205 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc212659g00001 279 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 249 - -
Stsc212659g00001 279 Gene3D - 48 120 IPR036879 GO:0003677|GO:0046983
Stsc212659g00001 279 MobiDBLite consensus disorder prediction 217 271 - -
Stsc212659g00001 279 CDD MADS_MEF2_like 37 111 IPR033896 GO:0000977|GO:0045944
Stsc212659g00001 279 SUPERFAMILY SRF-like 37 125 IPR036879 GO:0003677|GO:0046983
Stsc212659g00001 279 PRINTS MADS domain signature 73 94 IPR002100 GO:0003677|GO:0046983
Stsc212659g00001 279 PRINTS MADS domain signature 38 58 IPR002100 GO:0003677|GO:0046983
Stsc212659g00001 279 PRINTS MADS domain signature 58 73 IPR002100 GO:0003677|GO:0046983
Stsc212659g00001 279 ProSiteProfiles K-box domain profile. 121 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc212659g00001 279 FunFam MADS-box transcription factor MADS-MC 48 120 - -
Stsc212659g00001 279 ProSitePatterns MADS-box domain signature. 38 92 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212659g00001 Stsc-Chr212659 3621 7492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212659g00001 36 224 MADS-box Gene Family AT2G22630 57.672 1.75e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc212659g00001 K-box 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212659g00001 K09264 - mnt:21397917 273.092