Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212655g00004 ATGGCAGATAATGCGATTTCCTTCGTCCTAAATAATTTGTCCCAATTGCTAGTACGCCAAGCCAGTCTGCTATTTGAAGTGGACGACAAGGTTAGATCCCTTCAAAGTGAGCTCAGCATGATAAACGTGCTTCTCAAAACCTCTCAAGGCAAAACCAAGAAAGAAATAGACAAAGAAGTTGTTCGCCAGATCAGAGATGTTGCTTATGAAGCTGAGGATATCATCGACACCTTTATTGTAAACGTGGCTATGCACAAGCGTCGAACCATGCTGGAGAGGATGCTACATTATTTTGAATATGCAAAGTTGCGTCATAATGTGGCTGAGAAAATAGAGAGCATCAAAGCCACTGTCAACGAAATAAGAGACAACAAGCTCAAGTTTGCCGATATCTTCCAGCAAGAAGCTGAATCATCATCGTCCACAATAAAGGAGGAGGAGAGGGTGCAGTTGATGCACAAGAAGAGGAGAAATGTGGAGGAACATAATGTTGTTGGTTTTGTTAGTGAATCCAAGGCAGTTATCCAGCTGCTTAAGGAAAAGAGTACCCAAAGCAATGTTGCGTCCATCATCGGTATGGGTGGCTTGGGCAAAACCACCCTTGCTCGAAAAGTCTATAACTGCCATGAGATCAAGTCATATTTTGGCTGTCGTGCATGGGTTTATGTGTCAAATGATTGCAGAGTTAAGGAGCTTTTGATTGGCCTTATCAAGTGCTTGATGCCTAACCTCCAATACGAGCATGGCATGGCTGTGGACGAACTAAAACTCATGGTCCGAGAATTCTTGACCACAAGAAGGTATCTGGTAGTCCTTGATGACCTCTGGAAGACTCAAGACTGGGATGAGGTGCAAGATGCTTTTCCAAACAACAATAATGGTAGTAAAATACTCATTACTAGCCGTTTGAAAGAGGTGGCGTCCCACACAAGTCCATATCCTCCTTATTACCTTCAATTACTCAGTGAAGATGAAAGTTGGGAACTCTTTTCCAAGAAAGTTTTTCGAGGAGAAGAGTGTCCTTCTGATATAGAGCATCTTGGCAAACAAATGGTGAAAAGTTGTGGGGGTTTGCCACTCTCCATTGTTGTTTTGGCAGGGTTGCTGGCAAACAAGGAGAATTCACACAGAGAATGGTCCAGAGTAGTGGGACATGTGAACTGCTACGACAACTTGCCTGCAAGACTAAAGCCATGCTTTCTGTATTTCGGGATGTACCCTGAAGATTTTGAGATCCCTTTAAGGCCGTTGGTGCAAAAATGGGTTGCTGAGGGATTTATTAAACAAAGTGGGACCAGAAATGCAGAGGATGTTGGTGAAGATTACTTGTATGAGCCCATTGATCGTAGCTTGATTCAAGCATCGCGAGTGAACATTAATGGAGATGTGAAGGCATGTCGAATCCATGATCTTCTTCGAGATTTATGCATATCTGAGGCCAAAGAGTACAAGCTTTTTGAAGTATGCAGAGACAGTAACATTTTGGAGGGATCAAGACCTCGCAGGGTGTCTATCCAATGCGGCATGGATCGCTATGTTTCTTCAAGCAACAATGACCATTCATGTGTCCGCTCTTTGTTCTGTTTTGACCGAAGACACTCTTATAACTCCGGTGAGTGGAAATGCCTTTTTAAATGCTTCAAATTGGTTCGTACATTAGATCTTGAGATGGACATGTGCATGAAAGTTCCTTCCAACTTGAGCTTATTTATCCATTTAAGTGGAATATGGAACCTCAAACAACTTAGGCATTTGCATACTAATGGATCCATCATCGTCCTACGTGGCCGCCATAGTTCAAAAGCATCTGTTGAAGTCATGTGGAATCTTCAAACCATCTATTTCATTAAATTCAATAGAGAGATTGCATGCATGCTAGAGAAAGGAAGGTTTCCCAAGCTACGAACATTGGGTTTATACATCTCGTCGGTGGATAAACATAATGTGCAACATGAGTTGTTGTCAAGCATACAACGATTAACTCATCTGCGCAAGTTGCAACTTTCCTTTCAATTGAAGTATAAGGTCCAAAAGCCCTCAAACTACAATCAGATGGAATGGCACGTCGGTTGCAAGCCAATTGAATTGTTACATAGCATGCAGCAATTGTCAAATTTGAGCACATTATTTGGACTTTGCAACGTGTGA 2148 0.4223 MADNAISFVLNNLSQLLVRQASLLFEVDDKVRSLQSELSMINVLLKTSQGKTKKEIDKEVVRQIRDVAYEAEDIIDTFIVNVAMHKRRTMLERMLHYFEYAKLRHNVAEKIESIKATVNEIRDNKLKFADIFQQEAESSSSTIKEEERVQLMHKKRRNVEEHNVVGFVSESKAVIQLLKEKSTQSNVASIIGMGGLGKTTLARKVYNCHEIKSYFGCRAWVYVSNDCRVKELLIGLIKCLMPNLQYEHGMAVDELKLMVREFLTTRRYLVVLDDLWKTQDWDEVQDAFPNNNNGSKILITSRLKEVASHTSPYPPYYLQLLSEDESWELFSKKVFRGEECPSDIEHLGKQMVKSCGGLPLSIVVLAGLLANKENSHREWSRVVGHVNCYDNLPARLKPCFLYFGMYPEDFEIPLRPLVQKWVAEGFIKQSGTRNAEDVGEDYLYEPIDRSLIQASRVNINGDVKACRIHDLLRDLCISEAKEYKLFEVCRDSNILEGSRPRRVSIQCGMDRYVSSSNNDHSCVRSLFCFDRRHSYNSGEWKCLFKCFKLVRTLDLEMDMCMKVPSNLSLFIHLSGIWNLKQLRHLHTNGSIIVLRGRHSSKASVEVMWNLQTIYFIKFNREIACMLEKGRFPKLRTLGLYISSVDKHNVQHELLSSIQRLTHLRKLQLSFQLKYKVQKPSNYNQMEWHVGCKPIELLHSMQQLSNLSTLFGLCNV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212655g00004 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 403 IPR027417 -
Stsc212655g00004 715 Gene3D - 392 479 IPR036388 -
Stsc212655g00004 715 Pfam NB-ARC domain 173 386 IPR002182 GO:0043531
Stsc212655g00004 715 CDD RX-CC_like 2 123 IPR038005 -
Stsc212655g00004 715 PANTHER DISEASE RESISTANCE PROTEIN RP 31 685 IPR044974 GO:0006952
Stsc212655g00004 715 Pfam Rx N-terminal domain 5 88 IPR041118 -
Stsc212655g00004 715 FunFam Probable disease resistance protein At1g61300 145 313 - -
Stsc212655g00004 715 PRINTS Disease resistance protein signature 187 202 - -
Stsc212655g00004 715 PRINTS Disease resistance protein signature 355 369 - -
Stsc212655g00004 715 PRINTS Disease resistance protein signature 262 276 - -
Stsc212655g00004 715 Gene3D - 4 108 - -
Stsc212655g00004 715 FunFam Probable disease resistance protein At1g63360 389 478 - -
Stsc212655g00004 715 Gene3D - 142 312 IPR027417 -
Stsc212655g00004 715 Gene3D - 321 391 IPR042197 -
Stsc212655g00004 715 FunFam Probable disease resistance protein At5g66910 320 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212655g00004 Stsc-Chr212655 9273 11592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212655g00004 165 362 WRKY Transcription Factor Family AT5G45050 24.876 1.10e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212655g00004 - - aip:110269956 982.245