Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212653g00002 ATGGCGCCGAAGCAGAGAGCAGCGAGGAAGGTTAGCAGGAACCCTGAGCTGGTTCGTGGGATCGGGAAGTACTCCCGCTCAAAGATGTACCACAAGAGGGGCTTGTGGGCCATCAAGGCCAAGAACGGCGGCAAGCTCCCCCACCACGAGCCCAAGCCCAAGCCCCAGGCCCCCGCTCAGAAGCCCCCTAAGTTCTACCCTGCTGAAGATGTCAAGACTCCCCTTGTCAACAAGCACAAACCTAAACCCACCAAGCTCAGGGCTAGCATTACTCCTGGGACAGTGCTGATTCTTCTTGCTGGAAGATTCAAGGGGAAGAGAGTTGTGTTCCTCAAGCAGCTTCCGTCTGGGCTTCTTCTTGTATCTGGACCTTTCAAGATTAATGGAGTTCCCCTGAGACGTGTGAATCAGTCATATGTTATTGCCACCTCAACCAAAGTAGATGTATCTGCTTGTAATGTGGAGAAATTTGATGACAAATACTTCTCAAAGGAAGTCCAGAAAAAGAAGAAGAAGGGAGAAGGAGAGTTCTTTGAGGCCGAGAAAGAGGAGAAGAAGACCCTCCCCCAAGACAAGAAAGACGATCAGAAGACCGTTGATGCTGCTTTGATAAAAGCCATCGAGAGCGTTCCAGACTTGAAGTCTTACCTTGGTGCTAGGTTTTCATTGAAGCAGGGCCAGAAGCCCCATGAATTAGTTTTCTAG 705 0.5021 MAPKQRAARKVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGKLPHHEPKPKPQAPAQKPPKFYPAEDVKTPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIATSTKVDVSACNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKKTLPQDKKDDQKTVDAALIKAIESVPDLKSYLGARFSLKQGQKPHELVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212653g00002 234 Pfam Ribosomal protein L6, N-terminal domain 4 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Stsc212653g00002 234 PANTHER 60S RIBOSOMAL PROTEIN L6 8 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Stsc212653g00002 234 MobiDBLite consensus disorder prediction 1 22 - -
Stsc212653g00002 234 MobiDBLite consensus disorder prediction 40 68 - -
Stsc212653g00002 234 SUPERFAMILY Translation proteins SH3-like domain 88 178 IPR008991 -
Stsc212653g00002 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Stsc212653g00002 234 FunFam 60S ribosomal protein L6 88 172 - -
Stsc212653g00002 234 CDD KOW_RPL6 82 234 IPR041997 -
Stsc212653g00002 234 ProSitePatterns Ribosomal protein L6e signature. 128 146 IPR000915 GO:0003735|GO:0005840|GO:0006412
Stsc212653g00002 234 Gene3D - 88 172 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212653g00002 Stsc-Chr212653 8739 11170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212653g00002 1 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 78.632 1.40e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212653g00002 K02934 - pvy:116113922 367.851