Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212643g00001 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCCGGAGGCTCCGCCGCGGTGGCGGTGAGGTCACGGCGGGTCACGGCGGAAATCCTGTGGCCAAACCTGAGGAAGACAGTTAGCAAGTCCGGCAAGAAGAGGGGTGGTGCCGGTGGCCGTGTGACGGCGGTTGATGATGACTTTGAGGCTGATTTCAGGGAGTTTAAGGATGAGTCTGACATCGACGAGGAGGAGGATTTCGATGTTGATGATGACTTTCTGATGGTTGGTGGTGGTTCTGGTGTCAAGGGTTTTGGATCATTCGGTTCAGCCAACACCGCCAAGACTAAGGGAGCTACTGCCGCGAAATCTGTGGAGACAAGCGGACAGGTTGAGAAGTCTGCCAAGAGAAAGAGGAAGAACCAGTATCGTGGAATCCGTCAGCGTCCGTGGGGGAAATGGGCTGCTGAGATCCGTGACCCGAGAAAGGGTGTTCGTGTCTGGCTTGGGACATTCAGCACTGCTGAAGAAGCCGCAAGGGCTTATGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGAGGTGCAGGCTGCACCCTCGAAGCGCTTCAAGCCGCGTTCGGAAATGCAGATTCCCAAGGAAAAAATGAACACTGCTAAGCCGAAACCAAACAACCAAATGTTCAACTTCGGTAATGATCTCGGGGACTTCTACTGTCATATTGATCAGGTGGAACAGAAGCCGCTGGTTAACCAATATGCTAACATGGAGTCTTTCCCCGGGAACGGACTTTTGGATGCATCCGATGATGTGGCTGCTTATTTCACTTCGGAACACTCGAGCAATTCGTTCGAGTATTCTGACCTTTCATGGGGCGAGCAGGGCCCAAAGACTCCCGAGATATCATCCATGGAGCAGGGTGCTGCCAATCAGGCAAAGAACATGCAGCAGCCTAACAACACTCAGGATGACTCTGCAAAGTCGCTATCTGATGAGCTCGCAGATATCGAATCCCAGCTGAAGTTCTTCGACACTTCTTATCTTGATGCGAGCTGGAACGGTACTTCCTTGGAATCCTTTCTTGGTGTAGAAGCAACACAGGATGTCGGAAACCCGATGAACCTTTGGAGCTTCGATGACCTGCCTTCCGTCGGAGGCAGTGTCTTCTGA 1164 0.5223 MCGGAIISDFIPGGSAAVAVRSRRVTAEILWPNLRKTVSKSGKKRGGAGGRVTAVDDDFEADFREFKDESDIDEEEDFDVDDDFLMVGGGSGVKGFGSFGSANTAKTKGATAAKSVETSGQVEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEVQAAPSKRFKPRSEMQIPKEKMNTAKPKPNNQMFNFGNDLGDFYCHIDQVEQKPLVNQYANMESFPGNGLLDASDDVAAYFTSEHSSNSFEYSDLSWGEQGPKTPEISSMEQGAANQAKNMQQPNNTQDDSAKSLSDELADIESQLKFFDTSYLDASWNGTSLESFLGVEATQDVGNPMNLWSFDDLPSVGGSVF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212643g00001 387 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Stsc212643g00001 387 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Stsc212643g00001 387 FunFam Ethylene-responsive transcription factor 2 132 191 - -
Stsc212643g00001 387 MobiDBLite consensus disorder prediction 283 328 - -
Stsc212643g00001 387 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Stsc212643g00001 387 MobiDBLite consensus disorder prediction 294 325 - -
Stsc212643g00001 387 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Stsc212643g00001 387 Gene3D AP2/ERF domain 132 191 IPR036955 GO:0003700|GO:0006355
Stsc212643g00001 387 MobiDBLite consensus disorder prediction 116 137 - -
Stsc212643g00001 387 Pfam AP2 domain 133 182 IPR001471 GO:0003700|GO:0006355
Stsc212643g00001 387 PANTHER DNA-BINDING DOMAIN 113 326 IPR044808 GO:0003700|GO:0009873
Stsc212643g00001 387 CDD AP2 133 191 IPR001471 GO:0003700|GO:0006355
Stsc212643g00001 387 SUPERFAMILY DNA-binding domain 133 192 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212643g00001 Stsc-Chr212643 3912 7052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212643g00001 1 379 AP2-EREBP Transcription Factor Family AT3G14230 45.226 1.07e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc212643g00001 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212643g00001 K09286 - gmx:547957 399.053