Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212642g00002 ATGGGATCTGCTCTTATTAGCTCTCTACCATTATTTTGGTGTCTCATTCCCTTGCTTCTTGTTGGCTTCAGCACACGCTTTCTTAAATTCCTCAAACACCAAATACTTTCAAAATCTAAACAGACTAGATCACTCCCTCCGGGACCAAAACCATGGCCTATAATTGGTAACCTACCCGAAATGCTAGCAAACAGGCCAACATCTAGATGGATACATAACATCATGAATGATCTAAACACTGAAATCGCATGCATTCGTTTAGGCAACATTCATGTCGTTACACTCACTAGTCCTGAAATTGCTTGCGAAATAATGACAAAACAAGATTCAGTTTTCGCATCGAGGCCGAGAAATTGGTCAAGCGAACATGTCTCTGGAGGGTTCTTGAGTACAATACTAGTGCCCTATGGAGAACAATGGAAGAAAATGAAGAAAGTCATGGCCAATGAATTGGTATCTCCAAAAAGACTTCAACAGCTACAAGTTAAGAGGATGGAGGAATCTGACAATCTTGTCCGCTATGTTTACAACCAATGCAATAAGAATGGTGGTGGCCTTGTGGATGTGAGGTTTGTCTCACGACATTTCTCAGGGAACATCATTAGAAGGTTGGTTTTCAATGCAAGGCACTTTGGTAAAGGAAGGGAAGATGGAGGACCTGGATTTGAGGAGGTGGAACATATAGATGCTATTTTCACCGTTTTGAGATACCTATTTGCATTCTCCATCTCTGATTACGTTCCATGCTTGAGAGAGCTTGACTTGGATGGTCATAAGAAGGAGTTGAAGAAGGCCACTAAGTTGATAACAAAGTATCATGACCCCTTAATCGAAGATAGGATTCAGCAATGGAAGATTGGCAAAAGAACACATCAAGAGGACTTGCTTGATGTTCTAATCTCATTGAAAGATGCTAAGCATAATCCCCTTTTGACTCTTGATGAAATCAAGTCTCAAATTATGGATATGATGATTGCAACCGTGGACAATCCATCAAATGCATTTGAATGGGGATTGGCTGAGATGCTAAATCAACCTGAGATAATCCAAAAGGCGACGAAAGAAATAGATAGCGTAGTGGGTAAAGAAAGACAAGTACAAGAATCAGACATTTCAAAACTCAACTATGTGAAAGCATGCATAAGAGAAGTGTTTCGCCTCCACCCGATTGATGACATCAACGCCACCCATGTTTCAATGGAGGACACATTTGTTGCCAACAACACCTACTTCATTCCAAAGGGTAGTCATGTTGTTCTAAGGCGGCAAGGAATCGGACAAAATCCAAGAATATGGAAAGAACCATTTAAGTTCAAACCCGAACGTCATTTAGAAGAAAATCAGGATGGGTTTAAGAATTTGAGTTTAAATGAGCCAAGTTTAAAGTTGATCACATTTGGCACTGGACGACGTTCATGTCCTGGCATGGTGCTTGGTTCTTCAATGACGATTATGTTGTTTGCTAGGATGCTACATGGTTTTGAATGGTGTGTGCCATCCAATGAGACAACCATTGACCTCTCAGAATCAGAACAAGATACCACAAAAGCAAAGCCACTCATTGCACGTGCAATGCCGCGGTTACCAGAAGAGGCTTATCAAATTTCTTAA 1611 0.4084 MGSALISSLPLFWCLIPLLLVGFSTRFLKFLKHQILSKSKQTRSLPPGPKPWPIIGNLPEMLANRPTSRWIHNIMNDLNTEIACIRLGNIHVVTLTSPEIACEIMTKQDSVFASRPRNWSSEHVSGGFLSTILVPYGEQWKKMKKVMANELVSPKRLQQLQVKRMEESDNLVRYVYNQCNKNGGGLVDVRFVSRHFSGNIIRRLVFNARHFGKGREDGGPGFEEVEHIDAIFTVLRYLFAFSISDYVPCLRELDLDGHKKELKKATKLITKYHDPLIEDRIQQWKIGKRTHQEDLLDVLISLKDAKHNPLLTLDEIKSQIMDMMIATVDNPSNAFEWGLAEMLNQPEIIQKATKEIDSVVGKERQVQESDISKLNYVKACIREVFRLHPIDDINATHVSMEDTFVANNTYFIPKGSHVVLRRQGIGQNPRIWKEPFKFKPERHLEENQDGFKNLSLNEPSLKLITFGTGRRSCPGMVLGSSMTIMLFARMLHGFEWCVPSNETTIDLSESEQDTTKAKPLIARAMPRLPEEAYQIS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212642g00002 536 Gene3D Cytochrome P450 38 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 Pfam Cytochrome P450 46 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 SUPERFAMILY Cytochrome P450 46 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Stsc212642g00002 536 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS E-class P450 group I signature 100 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS E-class P450 group I signature 196 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS E-class P450 group I signature 421 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212642g00002 536 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 31 535 - -
Stsc212642g00002 536 FunFam Cytochrome P450 9 38 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212642g00002 Stsc-Chr212642 8778 12547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212642g00002 5 533 Cytochrome P450 AT5G05260 50.936 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212642g00002 - K12153 qsa:O6P43_020443 649.047