Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212642g00001 ATGGCTTCACACAAAATTAAGAATGGTGTGAAAGCAAATGAGATATTTGAAGGTCAAGTTCAGTTGTACAAACACATGTTTGCATTCTTAGACTCTCTTTGCCTTAAGTGGTGTGTTGACATGAACATACCAAACATAATCCACAACCATGCTCAACCTATGACTCTTCATGAGTTGGTTTCAAAGTTACAAGTTCCATTAGCTAAGCTTAGTGGTGTGCACCGTTTAATGCGTTATCTTGCACACCTTGGATTCTTTGACATAGTAAGAATTACCCAAGAAGATCATCAAGAAGAAATGGAAGAAGCATATGCTCTGACTTATGTCTCAAAGCTCCTTGTTAGAGGCACTGATCACTGTTTATCTCCAATGGTTGACCTTGTTCTTGACCCAACAGTCTCAACTTCATACCAACAACTTGGGAAATGGATTCATGATCAGGGAAATCAAACACCATTTGCCATGGCATTGGGTACAGATATATGGGACTTTCTTAGCAAAAACCCTGCACATATGAAATACTTCAATGATGCAACTGCTAGTGACTCTCAAATCATAAACTTGGCATTGAGAGATCATGGTGGTATCTTTGAAGGGTTGGAATCAATTGTAGATGTTGCTGGTGGAACTGGAATGGTAGCCAAGTATCTTTCTGAGACATTTCCACATTTGAAATGCATAGTATTTGATCTTCCACAAGTTGTTAAAAATCTTAAAGGAACCAACAATTTGAGTTATATTGGTGGGGATATGTTTCACTCTATCCCCAAGGCTGATGCAGTTCTACTCAAGTGGATTTTACATGATTGGGACGATGATAATTGCATAAAGATATTGAAGAAATGCAAAGAGGCGGTTTCTTCAAGAAACAATAAGAGAGGAAAAATAATTATCATAGATATTGTGATAGATGATTCAAAACAAGATGAGCCTGAAACTACCCAAGCAAAGCTCCAATTGGATTTGGTGGTCACAGCATATTATAATGGAAAAGAAAGAACCAAGCAAGAATGGAAGAAACTCTTCACGGAAGTAGATTGTGAAGACTACAAAATCTCACCTTTAACCGGACATATGTCTCTCATTGAGATATATCCTTGA 1101 0.376 MASHKIKNGVKANEIFEGQVQLYKHMFAFLDSLCLKWCVDMNIPNIIHNHAQPMTLHELVSKLQVPLAKLSGVHRLMRYLAHLGFFDIVRITQEDHQEEMEEAYALTYVSKLLVRGTDHCLSPMVDLVLDPTVSTSYQQLGKWIHDQGNQTPFAMALGTDIWDFLSKNPAHMKYFNDATASDSQIINLALRDHGGIFEGLESIVDVAGGTGMVAKYLSETFPHLKCIVFDLPQVVKNLKGTNNLSYIGGDMFHSIPKADAVLLKWILHDWDDDNCIKILKKCKEAVSSRNNKRGKIIIIDIVIDDSKQDEPETTQAKLQLDLVVTAYYNGKERTKQEWKKLFTEVDCEDYKISPLTGHMSLIEIYP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212642g00001 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 364 IPR029063 -
Stsc212642g00001 366 FunFam O-methyltransferase ZRP4 115 366 - -
Stsc212642g00001 366 SUPERFAMILY "Winged helix" DNA-binding domain 13 116 IPR036390 -
Stsc212642g00001 366 PIRSF O-mtase 2 366 IPR016461 GO:0008168
Stsc212642g00001 366 Gene3D Vaccinia Virus protein VP39 115 366 IPR029063 -
Stsc212642g00001 366 PANTHER O-METHYLTRANSFERASE 19 342 IPR016461 GO:0008168
Stsc212642g00001 366 Pfam O-methyltransferase domain 137 344 IPR001077 GO:0008171
Stsc212642g00001 366 Gene3D - 8 113 IPR036388 -
Stsc212642g00001 366 FunFam Coniferyl alcohol 9-O-methyltransferase 5 113 - -
Stsc212642g00001 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 366 IPR016461 GO:0008168
Stsc212642g00001 366 Pfam Dimerisation domain 34 81 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212642g00001 Stsc-Chr212642 902 2877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212642g00001 33 341 Monolignol Biosynthesis Gene Families AT5G54160 30.449 5.23e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212642g00001 K22588 - ag:AAC49926 420.239