Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212639g00001 ATGGCTGCTGCAATTGTGGGAGAAGCCTTGCTCTCAGCTGCTTTGCAAGCATTGGTTGGAAAGATCACCACTGAGATATCGGAATTCTATGGAAGCAAGAATCTTCTTGATGAATCGCTGCTGGAGAAGCTGAAATTGACGCTGCTAAGCCTTCATGCTTTTCTGGATGATGCTGAAGAGAAGCAGATCAAGAATGCTTCTGTGAAGGCATGGCTTGATGAGCTGACTCAAGCACTCTTCGACGCCGATGACTTGATCGACGACATCGCCACCGAAGCTCTCCGTCGCAAGGTCGAAGCCCGATATCATCAAACTGTCAAAGCTAAGGTGCGGAATGTCCTCTCCTCTCCTTTCAAGTGGCCTTATCGAGAGCTTAATTCTAAGATGCAGAAAATGTTTGAAAGATTAGAGCACTTTGCACAGAGAGCACACAACCTTCCATTGGAAAGAGGTGTTTCTAGCAGTGTTTGGCGTGCAACACCTACAAATTCTGCAGTGAATGATTCTGTTATTTGTGGGAGGAATGATGAAAAACAGAATCTTAAAGAGTATTTGCTATCAAAAGGTGACGTTGCTGGTAGTGTTACTAAAATAGGAGTGCTTGCCATTGTTGGCATGGGAGGTGTCGGTAAAACCACCCTTGCTAAACTTGTATACAATGATGCTCAAGTTACAGAAAGGTTTGATATGCAAGCATGGGTATCTGTCTCGAGAGATTTTGATATTGTTAAGCTGGCAAAATCACTTCTTGAATCTGTCACGTCTGCGGCAACAAATTTTGATAACTTTGACACTTTAGGAGCTCAATTGCAAAAGAACTTGTCTGGTAAAAAATTCTTGTTTGTATTGGATGATATATGGAATGCAGGGTATGTTGATTGGACCAATCTGATGCACGTTTTTAATGTTGGGCAAATGGGAAGCAAAATCATTGTCACAACACGACACGAAAATGTTGTGGATGTTGTAAGAGCAATGGAGACTTGTCGTCTAGAACCAATGGCCAATGAAGATTGTTGGACTTTACTTTCCAAACATGCATTTGGAGCACAAAAATGCACTGAACTGTCGTCCAACCTCAGAGAAATTGGTAAAAAAATTGCTGAAAAGTGTGGTGGCTTGCCATTAGCTGCGGTCGCATTGGGGGGTCTTCTTGGCACAAAGTTATCAACCAACCACTGGAATAAAGTGTTAAACAGCAGTATTTGGCACCTCACTGTAAAGGAAGTACAACCAGCTCTTCTATTGAGCTATCATTTCCTTCCAGCTTCTTTGAAACAATGTTTTGCTTATTGTGCAATTTTTCCTAAGAAGTCCGAGTTGCAAAAAGAGAAGTTAGTTCAGCTATGGATGGCACAGGGCTTTGTTTATTTTTCCCAAAATGAGAAAAGCATTGAAGAAATAGGAGGCGAATACTTTGATGAACTAGTAGCAAGGTCATTGATTCGTCGATCCGTGGATGGACAACATTTCGAGATGCACGATCTCTTCAACGATTTGGCAACCATGGTTTCTTCTCCATACTGTAAAAGGTGTGAAGATCAAAACCCCGTTGAAAATCAAAACAAAATTCGTCAATTATCATACAAGAAAGGGATGTTCAACCATCTAGGCAAACTTGATTCCCTTCATAGATTGAAAGGCCTACCTACATTCTTAGCATTACCATTTATTGACTTGCATAGCAACTATTACCTTGCAAACGACTTGTTACATGCTCTCTTGCTAGTATTGAAACAGTTGCGGGTGTTATCTTTGTCAAATTACCGGAATGTCACTGAGTTGCCAAGCTCTATTGGAAATTTAAAACATTTGCGGTATCTCGATCTTTCTTACACTGATATTAAAAGGTTGTCTCCTTCAATATGCAAGCTCTACAATTTGCATACCTTGTTGTTGTCTCATTGTCAGGATCTTGTTGAGTTGCCAAATGAGATAGGAAAGTTGGTGAATCTACGACGCCTTGATATTGACGGCACTAAATTGCAAGAGATGCCCGTAGAAATAGCAAAACTAGAAAATCTACAAATCATGACTCGCTTTATTGTCAGCAAGGAGTACAGCGGACTGAAGCTTGCAGAAATGAGAAATTTTCCTCATTTACAAGGAAAACTTTGCATCTCAAAATTAGAAAATGTTGTTGATCCCTCTAATGCTTACCAAGCTAATTTGAAGGAGAAAAAACAAATTGAAGAGTTATCATTGGAATGGAGTGATTCCATTTTGGAAGACTCCCAACAAGTTGTACTTGAACATCTCCAACCCTCAACAAATTTGAAGAATTTGACTGTTAAATGCTATGGAGGAACTAGTTTCCCGAATTGGTTGGGTGATTCCTCATTTGGCAACATAGTGAATATGAGAATTAAAGATTGTCATCATTGTTCTTCATTGCCGCCTCTTGGACAACTACTTAGTCTGAAAGAGCTCTCCATTTCAGGTATGACATCAGTGAAGGCTATTGGTTCTGAATTTTATGGAAGCAATTCTCCTTCATTCCAACCATTTCCTTCCTTGCAATTTTTATATTTTGCACTGATGCCAAAGTGGGAAGAATGGAAGATGATAGATGGTATAACTTCTGAGTTTCCCCGTCTATCAAAACTATATTTGCGTAGCTGTCCGAAACTTAAAGGAAATTTACCCATCAATCTCCCTTGCTTAATAAGACTTGATGTAGAGGATTGTTCTCTACTTGAATCACAGTTTCCAGTTGAAGAGGATGGCAGAAACATCATGAGATCATTCAATCTGTTCAGTGAATTTATTCTTAATTTCAATTCTCTTCAAGAATTGTATATCTATGCAATTCCCTCTCTAACAACCTTCCCCAACAATGGCCTGCCAAAAATGTTAAAGACACTTTCTCTCAAAGATTGCAAGAGCCTTGAATTCCCAACTCTTGATTTCCTGCGTGGTTGCAAGGCACTTGAGGATCTCACGATAAGGAGTAGCTGTTGCTCAATGACATCATTTCCCTTAGGTTCTCTCCCTATGCTCAAGCGGCTACAACTTTGGAAATGTAAGAATCTGAAATCAATTTCAATTTTTGAAGAAGCAGCAGCAAGCCAGTCTCTCATGTTTCTGGAATATCTCAGCATAGATGAATGTCATGAACTGGAGTCGATTTCCTTACTCAATTTGTCCACTCCTAACCTGAGTTATTTTTCGGTAGGGAAATGCGGCAAGATCAGTTCATTGCCAGAACCAATTAATAATCTCACTGGCCTCCAAACATTGTGGATTCGCGAGCTTCCAAACTTACAATCCATTGCCGAAGAAGGTTTGCCTATGAATTTAAGGACACTAGGTATTGGCAATGAAGAAGGGCTTTACTCAAATACAGCTATCACCAAGTGGGGGTTGGAACGACTCACTTCTCTTTCATTTTTGCATATTAGAGGTGAGTATATGGTTAAGAAGCTAATGGAAATGGAAGTGTCTGTGTTGCCCAATTCTCTTCAGACTCTAATCATAAGAGCTGCACATGAAATACAACATTTGGATGGGAAGTGGCTTCAGCATCTCGCCTCTCTCAAACGTCTTTCGTTGCTAGAATGTGACAAGCTCATGTCATTGCCAAAAGAAGGGTTGCCTTCCTCAATTTCATATCTAGAAATGATGGGATGCCCAATGTTGAAAGCAAATTATCAGAGAAAGAAAGGGAAAGAGTGGCACAAGATTGCTCACATCTCACTCATAATCTCTGATTGGTAA 3717 0.4011 MAAAIVGEALLSAALQALVGKITTEISEFYGSKNLLDESLLEKLKLTLLSLHAFLDDAEEKQIKNASVKAWLDELTQALFDADDLIDDIATEALRRKVEARYHQTVKAKVRNVLSSPFKWPYRELNSKMQKMFERLEHFAQRAHNLPLERGVSSSVWRATPTNSAVNDSVICGRNDEKQNLKEYLLSKGDVAGSVTKIGVLAIVGMGGVGKTTLAKLVYNDAQVTERFDMQAWVSVSRDFDIVKLAKSLLESVTSAATNFDNFDTLGAQLQKNLSGKKFLFVLDDIWNAGYVDWTNLMHVFNVGQMGSKIIVTTRHENVVDVVRAMETCRLEPMANEDCWTLLSKHAFGAQKCTELSSNLREIGKKIAEKCGGLPLAAVALGGLLGTKLSTNHWNKVLNSSIWHLTVKEVQPALLLSYHFLPASLKQCFAYCAIFPKKSELQKEKLVQLWMAQGFVYFSQNEKSIEEIGGEYFDELVARSLIRRSVDGQHFEMHDLFNDLATMVSSPYCKRCEDQNPVENQNKIRQLSYKKGMFNHLGKLDSLHRLKGLPTFLALPFIDLHSNYYLANDLLHALLLVLKQLRVLSLSNYRNVTELPSSIGNLKHLRYLDLSYTDIKRLSPSICKLYNLHTLLLSHCQDLVELPNEIGKLVNLRRLDIDGTKLQEMPVEIAKLENLQIMTRFIVSKEYSGLKLAEMRNFPHLQGKLCISKLENVVDPSNAYQANLKEKKQIEELSLEWSDSILEDSQQVVLEHLQPSTNLKNLTVKCYGGTSFPNWLGDSSFGNIVNMRIKDCHHCSSLPPLGQLLSLKELSISGMTSVKAIGSEFYGSNSPSFQPFPSLQFLYFALMPKWEEWKMIDGITSEFPRLSKLYLRSCPKLKGNLPINLPCLIRLDVEDCSLLESQFPVEEDGRNIMRSFNLFSEFILNFNSLQELYIYAIPSLTTFPNNGLPKMLKTLSLKDCKSLEFPTLDFLRGCKALEDLTIRSSCCSMTSFPLGSLPMLKRLQLWKCKNLKSISIFEEAAASQSLMFLEYLSIDECHELESISLLNLSTPNLSYFSVGKCGKISSLPEPINNLTGLQTLWIRELPNLQSIAEEGLPMNLRTLGIGNEEGLYSNTAITKWGLERLTSLSFLHIRGEYMVKKLMEMEVSVLPNSLQTLIIRAAHEIQHLDGKWLQHLASLKRLSLLECDKLMSLPKEGLPSSISYLEMMGCPMLKANYQRKKGKEWHKIAHISLIISDW 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212639g00001 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 432 IPR027417 -
Stsc212639g00001 1238 Gene3D - 334 416 IPR042197 -
Stsc212639g00001 1238 SUPERFAMILY L domain-like 493 900 - -
Stsc212639g00001 1238 PANTHER DISEASE RESISTANCE PROTEIN RP 41 1008 IPR044974 GO:0006952
Stsc212639g00001 1238 Gene3D Ribonuclease Inhibitor 854 1046 IPR032675 -
Stsc212639g00001 1238 SUPERFAMILY L domain-like 919 1229 - -
Stsc212639g00001 1238 Pfam NB-ARC domain 198 400 IPR002182 GO:0043531
Stsc212639g00001 1238 Gene3D - 417 503 IPR036388 -
Stsc212639g00001 1238 Gene3D - 13 142 - -
Stsc212639g00001 1238 PRINTS Disease resistance protein signature 576 592 - -
Stsc212639g00001 1238 PRINTS Disease resistance protein signature 371 385 - -
Stsc212639g00001 1238 PRINTS Disease resistance protein signature 200 215 - -
Stsc212639g00001 1238 PRINTS Disease resistance protein signature 273 287 - -
Stsc212639g00001 1238 Gene3D Ribonuclease Inhibitor 1047 1224 IPR032675 -
Stsc212639g00001 1238 Pfam Rx N-terminal domain 11 101 IPR041118 -
Stsc212639g00001 1238 FunFam Probable disease resistance protein At1g63360 418 503 - -
Stsc212639g00001 1238 Gene3D - 158 328 IPR027417 -
Stsc212639g00001 1238 FunFam Probable disease resistance protein At1g61300 157 327 - -
Stsc212639g00001 1238 Coils Coil 122 142 - -
Stsc212639g00001 1238 Gene3D Ribonuclease Inhibitor 518 846 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212639g00001 Stsc-Chr212639 3696 8938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212639g00001 198 821 WRKY Transcription Factor Family AT5G45050 23.852 2.29e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212639g00001 - - ahf:112719656 1594.33